YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60469300
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAALPKTK VLITGATGLL GRALMKVFTQ PPLEHIKLVG LGWSRYEKYV NQFPNELRKL  60
   61 DITNDSELSE FVNDFKPNVI IHAAAERRPD QCEGDKEKTQ KLNVGTTEKL IELSKSVNAT 120
  121 LFYISSDYVF DGENPPYDID AKTNPLSFYG KTKEESEQLI IKASKESDSF KYIILRVPVL 180
  181 YGYVENLKEC AVTAVAEQVI KARDANQPIE IDNWQIRYPT CVEDVARVCY ELMISKQYNS 240
  241 IYHFSGQQMK TKYDMAIDMA NVLGITNPQS IIKPINEKLP GAPRPHNACL NIFHTVDTIK 300
  301 KNLNNPTIHL SIFEVQLPLI FKDLKLI

Type	Start	End	Confidence
Signal Peptide	1	25	0.77
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	327	0.99