YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC61A_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	53	0.95
Non-Cytoplasmic	54	78	0.87
Transmembrane Helix	79	96	0.94
Cytoplasmic	97	114	0.86
Transmembrane Helix	115	135	0.91
Non-Cytoplasmic	136	142	0.82
Transmembrane Helix	143	166	0.92
Cytoplasmic	167	173	0.89
Transmembrane Helix	174	194	0.91
Non-Cytoplasmic	195	203	0.77
Transmembrane Helix	204	222	0.62
Cytoplasmic	223	242	0.61
Transmembrane Helix	243	262	0.93
Non-Cytoplasmic	263	283	0.67
Transmembrane Helix	284	305	0.74
Cytoplasmic	306	329	0.43
Transmembrane Helix	330	344	0.31
Non-Cytoplasmic	345	358	0.67
Transmembrane Helix	359	379	0.83
Cytoplasmic	380	413	0.87
Transmembrane Helix	414	434	0.79
Non-Cytoplasmic	435	437	0.53
Transmembrane Helix	438	457	0.76
Cytoplasmic	458	475	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFRFLDIVK PFTSLVPEVG QPDRKIPFRE KVLWTAICLF IFLVCSQIPL YGIRSTDSSD  60
   61 PFYWAKVIMA SNRGTLMELG ISPIVTSGMV MQLLAGAKLI EIDQSVKADR DLFSAAQKLF 120
  121 GMLICVGQGV AYIWSGSYGD PAVLGFGNCF LIVLQLFFAG IIVMLLDELL QKGYGIGSGI 180
  181 SLFIATNICE TIVWKTFSPT TVSVGKGTEF EGAVIALFHL LLTRNDKVRA LKEAFYRQNL 240
  241 PNITNLLATV LIFMVVIYFQ GFRVDLPVKS TRVSGQQGTY PIKLFYTSNI PIILQSALVS 300
  301 NLYFISQLLY RRFPDNILVN LFGAWRTSEY SQQMIPVSGL TYYISSPNNM SAVLADPFHA 360
  361 LFYITFMLTS CALFSKVWIE VSGSSARDVA KQLKDQQMTM KGHRDTSVIK ELNRYIPTAA 420
  421 AFGGLCIGAL TVVADFMGAI GSGTGILLAV TIIYQYFETF VKEQQELSGG IGGLF