YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TGDS_DICDI
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNKDDLFIQ KILITGGAGF IGSHLAIYLT KKFKNSKIIV LDKLDYCSNI NNLGCVLKEL  60
   61 NFKFYKGNIL DSELLENIFE KEKIDIVIHL AAYTHVDNSF KQSIKFTENN ILGTHYLLET 120
  121 CKNYKLKKFI YVSTDEVYGS GLIEDNDDNN NSINQSSNEK SILNPTNPYS ASKAGAEHLV 180
  181 QSYYKSFKLP VIITRANNIY GPKQYPEKII PKFINLLLNN KKCTIHGTGK NTRNYLYIDD 240
  241 IVSAFDIILR KGEIGNVYNI GTDFEISNLD VAKKIINISI NLNNNNNNNN NNNNNNNNNN 300
  301 NNNNNNNNND FNIMDYKKFI NYIDDRPFND HRYNINYSKL SNLGWKKSIS WEEGIEKTFI 360
  361 WYKNNRNYWL NLNVDSYENI NNDNNFKYFG NQNNNNENNN NDNNENNNNC RVCSNIDLNY 420
  421 GEKKPFHLTL KSEE

Type	Start	End	Confidence
Cytoplasmic	1	6	0.64
Transmembrane Helix	7	28	0.68
Non-Cytoplasmic	29	434	0.91