YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60469812
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	192	0.56
Transmembrane Helix	193	219	0.84
Non-Cytoplasmic	220	280	0.53
Transmembrane Helix	281	308	0.77
Cytoplasmic	309	369	0.65
Transmembrane Helix	370	394	0.89
Non-Cytoplasmic	395	400	0.57
Transmembrane Helix	401	421	0.92
Cytoplasmic	422	431	0.56
Transmembrane Helix	432	455	0.87
Non-Cytoplasmic	456	465	0.60
Transmembrane Helix	466	488	0.90
Cytoplasmic	489	498	0.63
Transmembrane Helix	499	520	0.92
Non-Cytoplasmic	521	580	0.69
Transmembrane Helix	581	602	0.86
Cytoplasmic	603	632	0.72
Transmembrane Helix	633	653	0.80
Non-Cytoplasmic	654	668	0.59
Transmembrane Helix	669	692	0.75
Cytoplasmic	693	705	0.56
Transmembrane Helix	706	731	0.79
Non-Cytoplasmic	732	738	0.58
Transmembrane Helix	739	761	0.91
Cytoplasmic	762	767	0.62
Transmembrane Helix	768	789	0.94
Non-Cytoplasmic	790	791	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRKPLLSK NEQDYDEING ISMGNRAVNP SVLQHNVVIL PIDENSNNKD NNSTNSSNNN  60
   61 NNNNNNNNNN NNTYQEIGKG SNTTTTNTTT TNTTTTNTTD KNKKRKKDKI PSLYIAEKEQ 120
  121 PITFDDFGIT DDTNPIEVKH QIQNHMFGFK PFKSKLTKRR VEERSPEVQS LYSDERKDTN 180
  181 PNSIPNTIGN VVYCIIFGFP LSILYVICSI ILCLTYFGLP YGKLFWRLKG FVFWPFGKYL 240
  241 QLSTTNSLFG QDEERLPISS GRRRAQSIAH RKLTLYNYIG AFVYYLFIAP FIIISETIVL 300
  301 SLAWMLVVSI PTAKNHTKLL THLITNPLKL RIEDYPRADC QILLYPVEAF NRFYYKYTIN 360
  361 GMNVNYFTNF LFFYFILFLD LLPFVIISLV FGFFLEDKIN PIVIFICCLL STIPLSYYNG 420
  421 MAIASLSAQT SFAIGALINA SFGSIIELIL YVVSISGAQE EVARSALTGA LLGSMLLIPG 480
  481 LSMVIGGLKH KEQRFNPTLM GVNTILLMIA VVAAFAPTLF YKIYGSFGFS CTSCIQQPTN 540
  541 VTVDGVAING TTTNTLMDCG KCTIVSSDLD EDPIYTQKAR TLMYICSGIL PLTYFIGLLF 600
  601 TLKTHTHILH APPEKKKQEP TDETKEKSIE YEWSKLQCII VLLACTTMFA LVSEKMVGTI 660
  661 DPVVSALGLT HEFLGVTILG IIPSAAEYLN AVQFAIHNNM PLALEIGASA AVQITLFQMP 720
  721 VLVFICAVYN HLSSEGSFTL IFPLMDFFAI FFGVMVMNLV FSNGRTNYFI GSTLVIIYLV 780
  781 IVFCFYFTPV A