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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60469782
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNNQSSST NTILLEENEN NNQNNLNINL NTGSSNNSSM KNSNSIHDIL IENNRIAKDT  60
   61 IIVNSNILNS GERNNEGQLN LNSNTNKSFD NPNNIKNLEE ESDNIEKNNS KNNINSQDNI 120
  121 NNNSNSNNNN NNNNNNNNNN NNNNNNNNDN INDDSNNNIL SIGKEKTQQY NPLTRGSSYL 180
  181 LDNNSIASSS NSFSPTGLVQ VPFTPETVTI KRPIMLSTNL EQKQSFYNTE TEDGEDKNDN 240
  241 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNKNKKNDNS NNNNKTKNGT 300
  301 NIDDPSNFSP KLTSKIGRHT KKPSVFPCII VVLFEIIFGL GTLYPLVIGI IRHHVTLLIC 360
  361 GCFGSLFLVF SIIGFISLLK IRPVLLKIFY YWKYFSLGLI ILVTVAIGLL SYYKDPLVVS 420
  421 NWWASLILCV GIAILFIIWT VTCILWIKPL IKEIRSVESV VLKELVDEEN IKDTSSDIDI 480
  481 DTLDKLTIKP QYGIIQPEEP LRIAMRKFNK NPETGIQFIQ ENNLLSQTPY RDIVTFLYNV 540
  541 DGLNKVKVGD YLGENNPINI NILQQFVDQY NFQSKKFDES LREFLSKFRL PGEAQKIDRI 600
  601 MESFARKYHR DNPGTFPDSD TAYLLAFSLI LLNTDAHNPA IKNKMTKRSF VQNNTGFKGK 660
  661 KDLPIEYLES LYDRIINCEL KMDSDSLFSN ALIKGWLNKM TSNEKTWQRR WFVLKNNCLY 720
  721 YFKNEKDEDH PKVIIPLEGL KVTLLSDLIF EIEDTTVGTI KSVKLMPTGP VEGQHSKYLL 780
  781 KAPTIEEANK WVDSIRNNVL GSPVLQLIKK KKKILNRPSG GARRKSISNE NSHHHHHSRG 840
  841 SGGGGSSSNK YHASSSSATS PINVQQPNPQ KGSIDSPVVP IGRENDVDSS VNGSLKSDDY 900
  901 LTTATTSETD IYGGSQSSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle