YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468736
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.99
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	128	0.87
Transmembrane Helix	129	148	0.95
Cytoplasmic	149	157	0.82
Transmembrane Helix	158	179	0.93
Non-Cytoplasmic	180	186	0.72
Transmembrane Helix	187	210	0.85
Cytoplasmic	211	219	0.85
Transmembrane Helix	220	242	0.88
Non-Cytoplasmic	243	256	0.90
Transmembrane Helix	257	279	0.93
Cytoplasmic	280	325	0.98
Transmembrane Helix	326	348	0.89
Non-Cytoplasmic	349	359	0.86
Transmembrane Helix	360	381	0.89
Cytoplasmic	382	391	0.76
Transmembrane Helix	392	412	0.94
Non-Cytoplasmic	413	420	0.87
Transmembrane Helix	421	441	0.96
Cytoplasmic	442	455	0.90
Transmembrane Helix	456	478	0.89
Non-Cytoplasmic	479	482	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENNFIDTVI GENIITDSIN STSNSLKSSV SSTETTCNKS IINNEENYND DQKKEILEII  60
   61 NLSDDDEISS DTIKTEFEIE DINKNQIKKI DKNIAFLIFI LGMGNILPFQ TFLASLDYLD 120
  121 NIFPQYKMAS TFPCIYMVVI CVTFIVLLRF QNKFKSHIIL SIGFPCYIVL MILTPIVTIV 180
  181 SHTPITTYLV ILLLMALCSF VDGLSQGTIY AYASKFGPRY STIAVTGNGV AGVFVVLTRL 240
  241 ICKLSFSSDN NSKKIGLIVY FIISAIIILI AITTFFYSLK IERIRKILIT NNNNNNNKNQ 300
  301 IENDNQVNNI NGKEKHPFKE VFKKTYGFGF MVFYNFVIVL FLFPGIVVRI ESLHGIKSDW 360
  361 WVFIIIAVYN TSDCIGKTLF SIFNYIILPL KLVWVVLIGK SIFVLLFFLC IYNDNFNHEQ 420
  421 MVIIFLIIFG VLSGGVVSYG VSEGPKRVEE KYKPSCSVFL SLALNIGLMS GSSLNLLVSF 480
  481 FM