YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468723
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSYLVVGG CGFLGRYIVE SLLARGEKNV HVFDIRKSFE DDRVTFHIGD IRKTEDLESA  60
   61 CKGITTVFHT ASPTHGMGYD IYYSVNVIGT ERLIEACIKC GVKQLVYTSS SSVVFNGKDI 120
  121 VNGDETLPYV DKHIDPYNKT KELGERAVLK AKGSNLLVCA LRPAGIFGPR EVQGWPQFLK 180
  181 AAKEGKNKFM FGDGNNLCDW TYIDNVVHAH ILAADNMTTN SPISGSVYFI TNDEPIPFWD 240
  241 MPIFAYEAFG YERPKMKIPF TIMYCIAWMI DLITLLLSPF VKLHPTISLF RIIYTNSTRY 300
  301 FNIEKAKKEL KYKPIVSLRD GMEKTKEWFL QQNPSFINKS KETSKLLKK

Type	Start	End	Confidence
Cytoplasmic	1	259	0.59
Transmembrane Helix	260	281	0.69
Non-Cytoplasmic	282	349	0.80