YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60470328
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFDFLYKSI IEEVRTIFFF FFFFFFFFFL FGFYYKTHQK KKIQMADDKK RELEETSTTT  60
   61 EETSTEDNHT KKKLKVDPTP SVEDNNNKTT ENKETEENKE PTTTTTTTEE KKEEKKEEEN 120
  121 KETTTTTTDE KKDDKKEGVE EEKKEEEKKP TSIFGSGSSI FGSGFPSTGF GSASNTFSFN 180
  181 LNSTSSFSFG FNKSSTDSSS NTTGTSLFGN NNNNNNNNNN NTKNDDSEKS ESSVSNNGCD 240
  241 ESDNTTFEPI IQAQEVELKT GEEDETTLCS TKGKLYILQD KQYKERGVGT IRVNKDLEEK 300
  301 SRIIMNADGS KKNILNVNIF PKMKVTSPNE KTLTFIAFED DKICTFVLIA KPEEIKNFST 360
  361 VINKQISSLE VA

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.66
Transmembrane Helix	16	35	0.96
Cytoplasmic	36	152	0.69
Transmembrane Helix	153	173	0.52
Non-Cytoplasmic	174	372	0.86