YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60470323, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	174	0.92
Transmembrane Helix	175	195	0.82
Non-Cytoplasmic	196	219	0.84
Transmembrane Helix	220	240	0.94
Cytoplasmic	241	248	0.74
Transmembrane Helix	249	270	0.80
Non-Cytoplasmic	271	276	0.58
Transmembrane Helix	277	295	0.94
Cytoplasmic	296	306	0.88
Transmembrane Helix	307	330	0.87
Non-Cytoplasmic	331	336	0.83
Transmembrane Helix	337	357	0.94
Cytoplasmic	358	418	0.97
Transmembrane Helix	419	444	0.81
Non-Cytoplasmic	445	454	0.86
Transmembrane Helix	455	478	0.91
Cytoplasmic	479	485	0.89
Transmembrane Helix	486	506	0.94
Non-Cytoplasmic	507	522	0.95
Transmembrane Helix	523	546	0.86
Cytoplasmic	547	560	0.83
Transmembrane Helix	561	582	0.86
Non-Cytoplasmic	583	588	0.90
Transmembrane Helix	589	611	0.91
Cytoplasmic	612	630	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIIEIRIGN NNNDIIISII KKWIKENEIF IEIKNLLLSS SIILKKIDYF NEIKRFSYIE  60
   61 YQIYFNENKI KNDKNWTCKE LIPNHTNNRM ILFFGNGSKN KLKEESSTIK FINNKNYLNS 120
  121 NNFKKVNIVS IMIENEKIVG ENEPLLLNEN INISTTTITT RNNNENLNNN NNSKLSFFLI 180
  181 FNVSFSVLST LQFGYNTGVI SPTILDIQTI FGLNVNEKSM LVSSVLFGAM LGSFLSGFFV 240
  241 DIFGRKKTLL GNNLFYLLGP LLCSVGKNYA TLLIGRLITG VGVGIASSVV PLYITEISPP 300
  301 SFRGSLGLLR QSTVTLGIML SSLFAYGLLV YSNGWRYTFA IASIPSLFQF ILGYWFVESP 360
  361 RWLVSKNRED EAKQIMKKIE PHVSEDLIDL QITRIRSSVL EQKGNDNWLQ LFQYQYLKIY 420
  421 IIGFGLNMLQ QFVGINCVIY YSGIILEDAG FAKNAAVLIG ALVGIPQLVM LLISVWLIDR 480
  481 FGRKPLLLVG CIGMIIGLAV LGYPFYDNSN PTGKIDNTKK GWIAVAGMIF FKLMFSMGLG 540
  541 PIPALIGSEI FPSKIRGKAM AISQLLNWAA NCIVNSMYLH MVNSKLGQAG TFWFFGGISI 600
  601 ITFFFVLILV PETKNVQIEE LSKRLLLKNK