YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468186
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	214	0.97
Transmembrane Helix	215	235	0.91
Non-Cytoplasmic	236	246	0.86
Transmembrane Helix	247	268	0.91
Cytoplasmic	269	278	0.90
Transmembrane Helix	279	298	0.96
Non-Cytoplasmic	299	305	0.78
Transmembrane Helix	306	325	0.95
Cytoplasmic	326	333	0.80
Transmembrane Helix	334	353	0.94
Non-Cytoplasmic	354	373	0.94
Transmembrane Helix	374	394	0.96
Cytoplasmic	395	402	0.88
Transmembrane Helix	403	425	0.91
Non-Cytoplasmic	426	434	0.83
Transmembrane Helix	435	454	0.94
Cytoplasmic	455	464	0.80
Transmembrane Helix	465	483	0.91
Non-Cytoplasmic	484	489	0.77
Transmembrane Helix	490	508	0.96
Cytoplasmic	509	510	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNTNIENNN NIGNNNNEER EIIGSAIITN SIDNSDKNNE NELIKLGKQI DDIEDAKSLL  60
   61 KKNKEQLESL QNNKIDLNKS SNAVPNNVLK TSTNSIPENK GLKSSTTNLN KSTGLKLSQL 120
  121 FVNPLLYSVA SEDHMVLQVS PSEMPPSPRD IEAANNEEDD DSDNIPMNKV DSNLTTTPGG 180
  181 ENNNNDDEEI TDDGNVKVVQ RNKYLQKWDE IWSKFQGIIL LVLSTGLFSV MALAVKQLSK 240
  241 ELSSLEIAFF RSFYCFIGCL LILFPLKINP LGPKEKRLFL SLRGLSGTIG LCAYFYSITV 300
  301 LPLSEAVIIS FTSPVMTAAL AAVLLKEKWG PVQAICAFLS LCGITVISKP SFLFHDDHND 360
  361 GSTASHAEGD PHKLLYIFTG IIGAFFGAIS YIAVRKVGPN VHAFVLVTYF SGLASLVTFP 420
  421 SAFIFQTFKW PSLKAWGWIT LMGVFGTVAQ GAVNRGIQLE KAAKAAAMNY LQIIFTFIWE 480
  481 ITFLHETIDW ITLLAAGLIL SCAIVTAIRK