YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468153
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDENGVSE IEWERLYNPD NSIFLSGRKL MSEVNAIIFL VVCTNIFFVI RFFFQHYVLK  60
   61 PIALSFNMRK SYTARFLENG WYTLYYISFF LIGSYVYSQE SWSIFPTMNI WLGWPTQPFS 120
  121 TLFRTYYLIE LSFYVHCTIA LFFETRRKDF NQMLTHHVAT FFLVGCSYWY RYHRIGIAIL 180
  181 WIHNIADIFL YSAKALNYIS KEVKNKTIQI ICDGLFVMFA VSFFVTRLIF FPFTLIKSSL 240
  241 TEAYYVSVEF PLFYPTNVAL LTLLILHMFW FFLIARIIYI KLFKSKDFDD IRSDSDEDEE 300
  301 VKPTQKGLEA EPTRTNKNTN NNKNNKLTQT KVSKAAQKKN E

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.78
Transmembrane Helix	34	55	0.89
Cytoplasmic	56	78	0.70
Transmembrane Helix	79	98	0.87
Non-Cytoplasmic	99	122	0.76
Transmembrane Helix	123	143	0.86
Cytoplasmic	144	152	0.80
Transmembrane Helix	153	172	0.89
Non-Cytoplasmic	173	178	0.67
Transmembrane Helix	179	198	0.82
Cytoplasmic	199	209	0.89
Transmembrane Helix	210	231	0.90
Non-Cytoplasmic	232	252	0.89
Transmembrane Helix	253	274	0.87
Cytoplasmic	275	341	0.96