YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAR4_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLQEINLT YSILVIADFS SIFGCLLVLI AFKKLKLLRN HITRVIACFC VSSLLKDIIS  60
   61 TGLTLSLGPQ NEAGSTSFQC YLYAITITYG SLACWLWTLC LAFSIYNLIV KREPEPEKYE 120
  121 KFYHGVCWTI PLICVIVMLA KKTIEPVGNW CWISEKYVGY RFGLFYGPFF AIWIISAVLV 180
  181 GLTSRYTYSV IRNSVSDNKD KHMTYQFKLI NYIIVFLLCW VFAIVNRILN GLGYYPTLPN 240
  241 ILHTYFSVSH GFFASVTFIY NNPLMWRYWG SKIFLIFAKF GYFVELQRRL DRNKNNNNPS 300
  301 PILNSYAATV YHSSTIESLS LQHNNDISND NQQQQQQQQT PQQPQQQFQQ QQSPTVIEMQ 360
  361 NLKQDQNIEN NEQNENCYNT IDTNIEINTN KLNDNSFEIT QPSNDLNTIE NNNNYNNNNN 420
  421 NNNNNSLVIE KEKDEREKKD NKF

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.91
Transmembrane Helix	9	32	0.88
Cytoplasmic	33	41	0.85
Transmembrane Helix	42	65	0.81
Non-Cytoplasmic	66	84	0.87
Transmembrane Helix	85	109	0.85
Cytoplasmic	110	121	0.94
Transmembrane Helix	122	144	0.88
Non-Cytoplasmic	145	164	0.94
Transmembrane Helix	165	188	0.85
Cytoplasmic	189	208	0.91
Transmembrane Helix	209	229	0.91
Non-Cytoplasmic	230	240	0.91
Transmembrane Helix	241	262	0.81
Cytoplasmic	263	443	0.78