YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66816329, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.91
Transmembrane Helix	35	57	0.67
Non-Cytoplasmic	58	73	0.63
Transmembrane Helix	74	94	0.63
Cytoplasmic	95	113	0.69
Transmembrane Helix	114	131	0.85
Non-Cytoplasmic	132	146	0.69
Transmembrane Helix	147	164	0.87
Cytoplasmic	165	176	0.75
Transmembrane Helix	177	199	0.89
Non-Cytoplasmic	200	211	0.86
Transmembrane Helix	212	236	0.85
Cytoplasmic	237	334	0.76
Transmembrane Helix	335	357	0.90
Non-Cytoplasmic	358	375	0.88
Transmembrane Helix	376	395	0.83
Cytoplasmic	396	407	0.68
Transmembrane Helix	408	429	0.91
Non-Cytoplasmic	430	437	0.82
Transmembrane Helix	438	460	0.94
Cytoplasmic	461	622	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKFEEFKSF SKKNFSFFQE QYQISKKELI ILLKWSIPLI VSNLLNNVSY LFVNLIFVGK  60
   61 QSADQLAGVA LSNTWTYCTM SLATGLANAM DTLVSQSFGA NNLTLVGLTL QRASLVSNAS 120
  121 FLIVTALWCI TEKFLLLVGQ DSEVSYYAQQ YSLFLLPGLW FYLQTNVLQK YLQCQGVMWP 180
  181 SIVVGFIMNA FNVLFNFLFV GENYGDFSYK GAALATSISR ILAFFLMLAV IKIWKLHEET 240
  241 WFGWKRECLS LQGFKEYLKL GGPASIQHAS EAIGFEVLTI LAGLLGPGKV PLDAHSVTYN 300
  301 FTQLTYQFPS GISIATSVRV GQLLGSKNES MAKRVSWMAF VISLIFMGII AIIQYTCRHV 360
  361 IGYIYSDSED VVQTVAKILP IAALFQIFDG GQTIFQGVVR GMGRVITGAL CNFIAFYVIS 420
  421 IPLSAVFAFP LDKGVEGLWW GLCVGLVTIC VILIIIIFRV NWTTEMDRAF ERTKSMNMSQ 480
  481 ADLENGLELQ QKQMAQQENN CGSSTDGVST SEGSPITTIK VTTEAVVQES YDDDINDKNS 540
  541 DNNNKNNKKN NNSDDEDDDD EDVKSNKKRR GYNNYRTSSH HQMRTNSNNN FRTNSHNNFR 600
  601 TNSSPDFRNE VPDQSVNRCH PQ