YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60470271
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRAGKILQP SVLSPFVNGF LPKSALVSNK GLSLNSNKSL TFTFDSASIF SASSYSTTSQ  60
   61 QQQQQKHLTA RDKLPDNAKA ILNYKVFHYS TIIVAVSILP TIFAQGTNLA LVSDIALGIS 120
  121 LPAHLYLGME AVINDYIYRP ALRTTSKILV GGAAIIVCAG LITLSLRDGI GSVVSALWK

Type	Start	End	Confidence
Cytoplasmic	1	85	0.95
Transmembrane Helix	86	104	0.89
Non-Cytoplasmic	105	109	0.67
Transmembrane Helix	110	133	0.72
Cytoplasmic	134	147	0.72
Transmembrane Helix	148	166	0.96
Non-Cytoplasmic	167	179	0.81