YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60470138
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPTFINYTT LSVPNSIQIP NNLNNINNII NIQNNNNNIN NNNNNNNRKK RSKNALLHFI  60
   61 AGGIGGAAGV ICTSPLEVIK TQLQAKNSNL LVKDKPRFVP TTAYSLYHLV KRDGKSGLWK 120
  121 GLGAHLLGVA PARAIHFSSY SFTKSIMNKL GYTDGPILWI TSAVSSGAAV AITTSPIWLI 180
  181 KTRMQLQTSL KNFNEGTQYR GMFHCCLSIL REEGPLGFYK GLGASLISVS ESAFQFVLYE 240
  241 GFKNRIITEK RLKGYENPNE LSTSEYLISA GIAKLIAAIT TYPHEVVRTR LREQTKPGVK 300
  301 SKYTGVIQGL TLIAREEGIR GLFGGAGPHI IRVVPNSCIM FLTYELVLDI AHGVSLLFDT 360
  361 NHYRQ

Type	Start	End	Confidence
Cytoplasmic	1	55	0.93
Transmembrane Helix	56	76	0.77
Non-Cytoplasmic	77	156	0.62
Transmembrane Helix	157	180	0.88
Cytoplasmic	181	365	0.49