YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COQ2_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKSILSLQN FKFIKPCTNS SILKYNNNNN TNNNNNNNGI NKYNSTFNNN NSNFSNKNLF  60
   61 SSKQYQQQSI CNIPILSTIS YHNKNNTNIN TIINNNNSSN NNLINLNDKF NNLNNKTSPI 120
  121 IFNKNYSTTV STLLDDNNSN SNNNNNSNNN KPSTTFVNDW ISKFPNSVQP YLRLSRVDKP 180
  181 IGVWLLLYPC CWSISLAAPA GSFPDLKTML VFGIGAYVMR SAGCVINDMA DYKFDSKVER 240
  241 TKTRPIASKQ LTHKQSLIFL GGQLLASFGL ILSSLNYYTI ALCASSLPIV VLYPFMKRFT 300
  301 YYPQFVLGLA FNWGALAGYS AIAGSCNWSI VAPLYLAGIS WTMVYDTIYA HQDKRDDILV 360
  361 GVKSTALKFA EKSRIILSVF SGLVISGMFL TGIAANMPLF YYLGTAACSS HLIWQLKTVD 420
  421 FNNPSSCLEK FISNKNFGLY FLLIIIVSKL LQDKENENEI QKK

Type	Start	End	Confidence
Cytoplasmic	1	180	0.96
Transmembrane Helix	181	201	0.90
Non-Cytoplasmic	202	209	0.74
Transmembrane Helix	210	230	0.66
Cytoplasmic	231	250	0.71
Transmembrane Helix	251	272	0.70
Non-Cytoplasmic	273	276	0.59
Transmembrane Helix	277	296	0.83
Cytoplasmic	297	304	0.63
Transmembrane Helix	305	323	0.87
Non-Cytoplasmic	324	329	0.61
Transmembrane Helix	330	349	0.77
Cytoplasmic	350	374	0.83
Transmembrane Helix	375	395	0.90
Non-Cytoplasmic	396	436	0.61
Transmembrane Helix	437	451	0.41
Cytoplasmic	452	463	0.55