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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GACU_DICDI
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSKKTLTN FWKDPSTGNL VSPSPSSING GASSSGGGGS TISPTKLAKE GPVFGVPLND  60
   61 IFKRNSTNVH NVPNVIWHIS SNIRQSAMDV EGLFRIPGSN TTLQLLKKNY NEGKIGTKDD 120
  121 LNDKCDDIHT QASLLKLFIR ELPDPLFTFS LYDSFIKSHG SKDKSIRVGS LKMLLGQLPI 180
  181 AHFSLLKFLA ELLREVSTHS VNNRMTSTNL AIVFGPTVMR PQTEDIVKMI EDARHINGIF 240
  241 LLIIDEYEFL FNVMYINRNR NININIYLWK SKKNPKISFQ FWNFLFFILV FFFEQPTFAN 300
  301 NPSPNTSRNN LNSSVRQSPN KGFVSSNPNR KASKFEFSVV DDVENNSNDI NNNIKLNTNN 360
  361 NNNSGKSQQQ LLQQLQMQQL LSISPNSSVI GINQQNANNN SGNNNNNNNN NNSSNNQNKF 420
  421 SILLPVNNHP QPTLLAPSSP SSSIYGRNNS NGINNGATSP LPPASPRSSL TLLDMNHLNC 480
  481 GVNDYSGGYN NNINNSIGNN ELIRGLIKKT CSILFDKELT SLTDGFEITK DETFIPAFDT 540
  541 SNINNHHSSP TSNSVNNNNS NNNNNNNNSS NNNNNTLNSD ISQISPRFSR ANEISSASNS 600
  601 STSSPQLRSL LKSHVNNNLN NLNNLPNLLG NLQAQQQQQQ QQQQQQQQQQ QQQQQQQQQQ 660
  661 QQQQQQQQLK NQSDENNNVT INNSNNNNNT PTSPVLNIIN NAPITIPSSP PLNTVTSNLS 720
  721 PSTPYNESNN NNINNNNNNN NNNNNNNNNN NNNNNNNNIN SNSNNNPLDI AFSHLEKVRK 780
  781 EGKRNSDINL MSIDELNEEK SAIKKELRDF DTNFKRQYGQ LPRKNDKEIM RPLYIRYREV 840
  841 KSLIDLKSPQ SVTSTLSNSS SLPSTPISLS SSNSLNKSQP SNNNNNNNNN NNNNNNANNT 900
  901 NTNNSNNNNN NNNNNNNNNI NNNSNTANMS NSTSTLSSSG QHQLERANSS SSITSAAGIG 960
  961 GGSNSKSSTS PPNVVSPYIS PSTSFNSLTE LSNHQNNNNS NNNNNNNNNI DTSAPMIVDS1020
 1021 HQYNSGNSNS NSNSNSNSNS SSKSSSPNIT DFTKLSLNEL KDRYIKVKGE KRSLQIDLHR1080
 1081 YQSEFTKKHG RKVQFVEDRV PVQAEYEKYK ELKIEIVALE NILVLINNNH NHNHNHNHNH1140
 1141 NNNNNNNNNN NNNNNNNHTT LYHL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle