YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60473344
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNTIARIVV LIGLIFVATY TIYLLPNLSQ SIKVYQTENI YHLSNNKQQV SNYNIDYEFR  60
   61 GKNFTQDMNN FPWEDFKAAA RTGKTENTDK YSQMLILTLS NYLIEPPLVP INESCKPEPL 120
  121 PIINNSVCGK YPRVFSGKRD KPVKIGHMVQ IGFDIDVLEV HLNELYDVID HFFILESTVT 180
  181 HYHKMKKPLI WEHVKFQDRF IKFQDKVVHL ILDDTDEENG KGLFDAESYQ ETRRWQKFLY 240
  241 WNERTNQYGD DDIIGFGDTD EISARINLHY LKNCQFRKSV DIVDIGIWFP YGPINQVFKP 300
  301 FYSVPNNPYT LGDPTFYTLK RAKSTTKAPS RNRGTSGHYM LGGMHMTHYG YLPFQMVKYL 360
  361 SCTECGIKNE THVKNFSDDI QNGNIQKLEL RLLETKSDHA YKIQDISTMD DFFKKEVAIL 420
  421 PWFYNCNRNR YPVWERKNDP RLF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.72
Transmembrane Helix	8	26	0.85
Non-Cytoplasmic	27	443	0.98