YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSPA_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.95
Transmembrane Helix	59	80	0.66
Non-Cytoplasmic	81	87	0.43
Transmembrane Helix	88	106	0.74
Cytoplasmic	107	131	0.58
Transmembrane Helix	132	154	0.83
Non-Cytoplasmic	155	161	0.51
Transmembrane Helix	162	185	0.84
Cytoplasmic	186	192	0.54
Transmembrane Helix	193	213	0.90
Non-Cytoplasmic	214	224	0.51
Transmembrane Helix	225	244	0.94
Cytoplasmic	245	253	0.56
Transmembrane Helix	254	276	0.80
Non-Cytoplasmic	277	305	0.65
Transmembrane Helix	306	326	0.78
Cytoplasmic	327	373	0.79
Transmembrane Helix	374	393	0.85
Non-Cytoplasmic	394	406	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKIKKQNNI GSYSSDKDGE YKKFRFSKTS IRGFLLKEYE REVPIIVKIQ SYRNKFLDFY  60
   61 FKMASILGEE VFFILALPIS TWCVATQLGV ELCVVLALTI GGGNILKNTF TLPRPPPNIV 120
  121 WTNTAHQKDH GLPSTHTASA FGLTFYFLIY TYFLFPTIGE SFNISLLSMF FIVLFWSTSV 180
  181 MFSRLYNGHH TPMDVIAGLI VAITSILATT YQLRYFIEGM VLSETFLFGP MLYIAILSAI 240
  241 LFFHPQANTG PTPAYPETGL VCGASLGSLI SLWLHAQHPC PLMNQELLLL EANYDSIVST 300
  301 IHSIPLLLHG SRILIGLVLV GIAKVFSKKF FFFAYDLVIR ANTNNEQSQP ITTVSFDPNK 360
  361 KIIVTPTIEA FSKLFVYTCV SFTIVSMPYL FYYLNIQTSA DVTRYY