YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNT15_DICDI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFYNNNPR RNTFRLTERI KKKPYQTLIV FILIFLFLYV FGPFGEKKSN NNNNNHPVSK  60
   61 TSSFTESLYT KFQTETFAYR ANGDLKKYDI SIITQFTVDR FDRIAMMADK WRAPISAAVY 120
  121 ITSFKDIDEV FKLVRNSFAV TEFVDLHFLF ANKTRYPVNN LRNLALRNAR TEWCLLLDVD 180
  181 FISPLGMYDY LHSTLEKLDT SNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNENNDNDNG 240
  241 NNNNNNDNEK NFKKKQEDLK IDPNDFEGDL KAIEKLKRNG EKLYVKNLKK VLDGSENNLG 300
  301 KNINFNNNNN DNNNKDDGGG GGYYLNSDNS NINNNNKIAF VIPSFSSSIS RFDFPDNKKD 360
  361 LLDFIKQDLI KEINSGVCPK CHGPTNYSRW YLSSEPYLVQ YKWIYEPFLL YNRSQIHDYD 420
  421 ERLKGYGFDK NSHTFGMAAA GFDFVVLPDA WIIHMNHVSK PWEGADTFNE QMFDCLSIVC 480
  481 ESILPDAKSK NGYDPNAKLF NEPLKNNDNC LTREHW

Type	Start	End	Confidence
Cytoplasmic	1	24	0.95
Transmembrane Helix	25	45	0.90
Non-Cytoplasmic	46	516	0.99