YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66820941, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELNGSNNE KKIPSLTDHS VFYRKKKLYE KDETPLDFEM EWDPDHKIYT PPTLTPSLFK  60
   61 PNLNIITQDT IEKMSIDEIQ IKNIQTNNNI ITPPDNNNNS SNNNTPPLPQ QQQQQQQQQI 120
  121 NVNNEKENEK EKDINDIVNK VTIDDFKYNH QQQQQQNINN EKKVKKSSAS IAGHGHHPHN 180
  181 QQIALQKKPW FQRYGLKNSN NNNNNNNNNN NNSYSPMLSP PILFNNHHQQ QQHHQLYNNN 240
  241 DNFTNQSNSY KLSEVLEGYL YLIVRFLLIC ILFFAIYITF NSILHDVNFK YKQYSAELTK 300
  301 QLEKCSKLYS ENRCSPLTRI PAMEQQCTEW ELCIAKDPST LPKSKILAEI LSEVLDSFVS 360
  361 TMSYKTIVFL ICIIWMMIWI PNKLLANNNN NKNKNNNNIK NNNNPFLSSP QPTQSIFAKN 420
  421 LFTIEQNDIS KNFERRLISD WNK

Type	Start	End	Confidence
Cytoplasmic	1	260	0.80
Transmembrane Helix	261	280	0.93
Non-Cytoplasmic	281	360	0.80
Transmembrane Helix	361	382	0.81
Cytoplasmic	383	443	0.79