YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OXDD_DICDI
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQNKNNNNK NPKINLLIIG CGCIGLSTGI IALKSGNYKS VSIWAKDLPP NTTSNKAAAL  60
   61 WYPFLCNPLD LVGKWSAETM QYYKDHIIND PKSGTITKKV NEIFRRPHPE DPEWKPYIKS 120
  121 FRRARKDELP DGYVDGYAID DGFVMDTDMY MDYLVDQFKS LGGIIEQRHL VDIREAFVDH 180
  181 DVVVNCTGLG SRELFNDRTI YPGRGQIIVI KNSTDRSIMD EEDHIAYVIP RLTNTVLGGT 240
  241 NQEHDYNTNP TKKDTEEILK RVAMISPRFA KNRIEIQGVK VGLRPARHEI RLENEFFEGG 300
  301 SKLVVHNYGH GGSGFTVSWG CAIEAIKLVD QGLPKLLHFN KLISKL

Type	Start	End	Confidence
Cytoplasmic	1	13	0.71
Transmembrane Helix	14	33	0.75
Non-Cytoplasmic	34	346	0.94