YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60471121
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	273	0.95
Transmembrane Helix	274	295	0.85
Non-Cytoplasmic	296	301	0.71
Transmembrane Helix	302	319	0.92
Cytoplasmic	320	326	0.75
Transmembrane Helix	327	347	0.88
Non-Cytoplasmic	348	354	0.76
Transmembrane Helix	355	379	0.87
Cytoplasmic	380	389	0.81
Transmembrane Helix	390	410	0.61
Non-Cytoplasmic	411	432	0.59
Transmembrane Helix	433	451	0.94
Cytoplasmic	452	461	0.51
Transmembrane Helix	462	481	0.87
Non-Cytoplasmic	482	531	0.58
Transmembrane Helix	532	555	0.87
Cytoplasmic	556	571	0.57
Transmembrane Helix	572	594	0.81
Non-Cytoplasmic	595	604	0.47
Transmembrane Helix	605	632	0.78
Cytoplasmic	633	634	0.33
Transmembrane Helix	635	655	0.71
Non-Cytoplasmic	656	664	0.39
Transmembrane Helix	665	681	0.73
Cytoplasmic	682	682	0.00
Transmembrane Helix	683	697	0.78
Non-Cytoplasmic	698	944	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRYKQLGDD KQDDENQQTN NNNLNEENNL NNNNSNNNNN SNNNNIDNNN NEDNHNEEGR  60
   61 ILNNSNTNIQ RPQNILTSVR SPELYYLPPK KISLPGDSSP STLLHQSLNS NGAGGSNASS 120
  121 NASSNIGSKS NTPMLISTNS PKLTNNSSSP INILTNSHSN LMNSSSDIYI SSNNNSNGFP 180
  181 PLSLDNHYQQ QQQQPNNNKN NNNNDESITV EEMKAQHIKN KEDYDTINFM NTIKQIRTFK 240
  241 FEKKHKKKLQ RYLYNLVPII DWLPKYNWKS DWKGDLISGI TVGVMLIPQG MAYALVAKLP 300
  301 PIYGLYSSIL PVLAYCIFGT SKQLSMGPFA IISLLVSETV TGVVGAGNTD EVYHVSVAIL 360
  361 LALVCGAMQM FLGLIRFGFV ANFLSDPVRT GFTSGCALII GSSQLKHIFG YGVEETNFLL 420
  421 LLVIRYLKDI AKTNWWSFLL GIIGVVFLLG IKKLNARFKL KIPGPLLVVV VFTFFSFILK 480
  481 LEQRAHIKVV GEIPSGFPSP SFPLVRYNQS LYSQNEGVDG LPLPPNTNWF SVLIQLIPGS 540
  541 LVLTLVGFIS SISIGSKFGE KYNYIVEPNQ ELFALGASDF FGAFFLSFPV GASLSRTAVN 600
  601 AQNGAVSQVS SFICTVIIVI SVFFLTPVVY FLPRAVLSSI VIVAIIDLVE YQMVFDLWKV 660
  661 HRKDLLLFGI SFLSTTILGI LQGILIGAIA SLLMIIYRSA YPPFAVLGRL PGTEIYKNIK 720
  721 RVPKAETFKG VRIVRIDGSI YFANCMFIKK KLRHHEPFSL KSGDQNHGSQ EDIISFMTDS 780
  781 EAENAYIDDD EPIEVDIDGH KIIGAIIIDF SSVNDIDSTG IRMLKELVSD FRKRQLVIYF 840
  841 ASVKGYVRDS MKRGGVVDHY GADHFFWTIN DAVEHHLFLL RQSKRSKELS KSRSINNSSN 900
  901 NVIFNKQIQN NSILTTTTTN IDNDFDDVVG NASGNIPLIN LKKI