YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UCPA_DICDI
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNLNNNKN NKNKVAIGFI SGSLASICAT TVTNPIELVK TRLQLQGELQ LSQRIYNGVW  60
   61 DAFKQIYKTE GIRGLQSGLI PAYFSQATMQ GIRLGSFDLI SNALGAKPNQ DYFFLKNLLA 120
  121 GATAGAIGAA AGSPFDLVKV RMQAANMYKN DPQFVGYSSS FAAFKQIIQK EGFKGLTRGM 180
  181 LTSAQRTAVG SAIQLSTYGS CKNLVLNFVD DGIYAYIISS MVAGFIVTFG MNPFDVARTR 240
  241 LYFQGKGNSH GEIYKGLMDC VYKTVKKEGF GAVYKGFWAH YLRLGPHTIL TLVFWEQFKK 300
  301 LFSGEL

Type	Start	End	Confidence
Cytoplasmic	1	112	0.51
Transmembrane Helix	113	133	0.61
Non-Cytoplasmic	134	212	0.72
Transmembrane Helix	213	234	0.78
Cytoplasmic	235	306	0.72