YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60473763
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLILLLIL SIIIGVCVSF NPSKDTLFFE DFQDLGKSSS KWIKSSNQEY SGVIGFKAAN  60
   61 DPIDENDNGL VLTQAGKRYA ITYQLSHAID NTNKELIVQY ELQFQEGVTC SGGYIKLYTD 120
  121 REDFNVETVD SNTPYSIMFG ADVCGSNDRI HFIVRHRNPI TNVHEEKLIT AKPSVRKDRV 180
  181 SHIYTLIIRP DNTFTIKVDD ESVLDGSFHD SFTPAFNPPK EIDDPTDSKP SDWVDDAEIP 240
  241 EPGATKPDDW DEDQPLRIND PQAVKPSDWL DNEPFLISDP SETQPPEWNE EDDGEWEAPS 300
  301 IENPKCASGQ CGEWVIPTIA NPLYKGKWSA PMVANPLYKG EWKPRQIANP SYFNVENPYI 360
  361 VEPIIAVGIE VLSNTRDILF DNFIITHSQE EAQQLLQENW KEKHTIQKER QAAKNAEDAK 420
  421 KLDPSQGDIF ETIKFYLTLF QSEANQNPLL YLVGFSSLLL PIVFCFTRSK KPSSKKVKSD 480
  481 DDNNSTSTTT TNTSVTKESV SIQDKPTIES EESDESDEDN ETTKKSTVTK RTNKVK

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	447	0.99
Transmembrane Helix	448	467	0.90
Cytoplasmic	468	536	0.93