YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHE1_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.95
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	119	0.95
Transmembrane Helix	120	140	0.95
Cytoplasmic	141	149	0.73
Transmembrane Helix	150	168	0.93
Non-Cytoplasmic	169	210	0.60
Transmembrane Helix	211	238	0.83
Cytoplasmic	239	247	0.46
Transmembrane Helix	248	268	0.60
Non-Cytoplasmic	269	274	0.60
Transmembrane Helix	275	297	0.58
Cytoplasmic	298	308	0.62
Transmembrane Helix	309	334	0.87
Non-Cytoplasmic	335	354	0.68
Transmembrane Helix	355	379	0.85
Cytoplasmic	380	397	0.75
Transmembrane Helix	398	420	0.87
Non-Cytoplasmic	421	428	0.79
Transmembrane Helix	429	452	0.89
Cytoplasmic	453	461	0.76
Transmembrane Helix	462	483	0.87
Non-Cytoplasmic	484	497	0.76
Transmembrane Helix	498	519	0.89
Cytoplasmic	520	674	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNKSYILI VVLLLSLFYS SVSSTKTTLI KSNNHYNSDN SNNDNKNINI NNNNDGDGDD  60
   61 DDDNNKILIT PENQNHLIHD IGIDSSSTEI LFGSSSNSGS CGEKNNTKQN ALANQREANT 120
  121 IIFIIMLILT GSVLIVYFII SLDIPFVPES VAVVTYGIIL GIVFRFFYSD IVNHVVSFEP 180
  181 ENFFLFILPT IIFETGYSLH KTDFFNNIGP ILMFAVFGTI ITFLVVGFGI YIVGYFGVSI 240
  241 ALSLKDSFAF GSIISSTDPV CTLAIFQALN VDPMLYILVL GESILNDATS MMLYSVVEDT 300
  301 STRDIIISCA MFTVVAIGSV ILGVVMALLL SLILKWINIG KFPALETIFM VMFSYMSYVL 360
  361 AGALDISGVL AVFFFGITLN QYGAYSLSPY TKLTSGQLFR TAAFISETFL FLYFGLSLTA 420
  421 HEFKFDLGLF SWSILFTCLA RAISVFPMCF LLNKFLKTKI PWVIQVAIWF AGLRGAFAFS 480
  481 LSLDYISEDE HMNAYIRTNT LLVVVFTIFV FGMGTYPLLR VLGIKTSQTD QSLDNISKPM 540
  541 SKQTKQKDRT KLYESFDDKY FKPWFRKRVP PLANEAIEIF EKMVIQSSHD HELDSNPLRF 600
  601 DDDEEDDDDE DLDFDSDLDL NININTDSIH QSDNNNNDNG NNNNNNNNII INNNSQHHSN 660
  661 DGSNNKNNDT LPLI