YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SGMD_DICDI
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIILILVLV LVVSINALNN QFLHISDVHY SSAMNSLLYN ASVMCIGPTV TKEFDHKEHE  60
   61 DLIEDTERLN LPTNGLYGRY GCDTNQLLLS EVISEMLNVN SNPDFIIYTG DGAGHGLPNG 120
  121 PWSESQSTLA KSLYGAYPNT QFIPTIGNND VFPDYNSQCN DSNLQFLYET WAQWIPTNQV 180
  181 SSFLYRGSFV VSPVSGLTII SLNTILYSVK NKNTFSTPQD PCGQFAWLEQ QLIAAKQAGN 240
  241 SVYIIGHIFP GLDPFYLQGT WKSQYQTAFF NITSDYQTTI TAGFFGHIHR DEIRSIQFDN 300
  301 PSLTNNHYFP MFIGSSITPV YFNNPTFKQF TYDSQSKNIT DITAYFSDVY ISNLKGHMNW 360
  361 TEEYDFVSIY DIDNQYGIGG DQLNSLMERM VSSNSIFNNY DNFRSGSYLS DSPSMTCLIN 420
  421 AATIDELNAC TYIAANVA

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	438	0.95