YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60474706
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	82	0.86
Non-Cytoplasmic	83	117	0.97
Transmembrane Helix	118	141	0.89
Cytoplasmic	142	153	0.90
Transmembrane Helix	154	174	0.95
Non-Cytoplasmic	175	181	0.78
Transmembrane Helix	182	202	0.88
Cytoplasmic	203	212	0.79
Transmembrane Helix	213	236	0.92
Non-Cytoplasmic	237	243	0.77
Transmembrane Helix	244	263	0.97
Cytoplasmic	264	297	0.86
Transmembrane Helix	298	321	0.89
Non-Cytoplasmic	322	336	0.83
Transmembrane Helix	337	358	0.91
Cytoplasmic	359	387	0.82
Transmembrane Helix	388	409	0.85
Non-Cytoplasmic	410	427	0.75
Transmembrane Helix	428	451	0.91
Cytoplasmic	452	469	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILENNNNN ENINNIQYKK IDIKTPLVIN SDSEIGENFL TNGQVEIKKR PLKEHKYLKQ  60
   61 IIILFSFLPF IMIPSILFQL YLPSFFTDYV TFKYPDYSLE EIQSKAAYYK SYSDSLPYIS 120
  121 ALLFGPLIGV LSDNLINFLF LKIKKKKRYG RKPIFFGAGI LFILDAIATL ISVLTHNLMY 180
  181 HYVVHTIVGV NSVSNAALTA YISDISDDDH IPILYSLLGG VFGAGIILGP LVFILINLTS 240
  241 IPNITLYVIV GLLAVCMVII AFLDESVEIA KKNNKIKISN TTTNPIKLVK NLFTSNTYFS 300
  301 FIVIIYLLIS FATCDITLIF YYYCSFVYEW SPKDNSIFFG GLGFIIIVWG AVISPILLKY 360
  361 FCAMLGSPQV NNLVQAIISQ LTPPEMQATI LVGAQSISSI ASFLGSIVVN DIFMYSISNN 420
  421 ISHKFPQFVF LIFGIVIGLT TIGTIIIFNY YKKSNNFKQN QKNSYESIK