YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60462383
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIQFENEV DNKVFDIIVV GAGVAGSAFA YSLGKAGKRV LCIERDLSEP DRIVGELMQP  60
   61 GGVRALRELG MEDCLDGIDS SLVFGYGIFK HGKGTKLSYP KDSNGAIING FSFHHGRFIQ 120
  121 KLRLRASSCE NVFMVEGTVN SLIEEDGIIK GVTYIESKKK DNSNENKENS DDSNNNTATT 180
  181 NNNNNNNKDL IKEVRAPLTV VCDGCFSNLR KSLVPENQPL LTSTFVGLVI KGVQLPFQCH 240
  241 GHVFLVDPAP ILMYRIGSDE IRVLVDIPFK CPPNSELKEY LETVTAPQLP ESLRESFLYA 300
  301 LRNSPLKKMP NSRLPPNPTP KPGVLMIGDS WNMRHPLTGS GMTVCLSDCV ILSKLITQSN 360
  361 PSINFTDRVS MERLIQKFTI QRKPLASTLN VLAGALYKVF SASNEHLRKA CLGYLSLGGE 420
  421 FSAGPVALLS GLKPKPHILA MHFFAVAFYG VLKNILPFPT PARIRRCYQI LCAASDIVVP 480
  481 LLRSEGVLKY IQNICIILRL TK

Type	Start	End	Confidence
Non-Cytoplasmic	1	384	0.64
Transmembrane Helix	385	400	0.33
Cytoplasmic	401	409	0.59
Transmembrane Helix	410	429	0.62
Non-Cytoplasmic	430	437	0.78
Transmembrane Helix	438	456	0.82
Cytoplasmic	457	502	0.79