YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60474548, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDIKVVSQR SKKEVGSFST SSSTTVGELK KQISSKTRLG TERIRLAVPS KTSKLPNAFE  60
   61 ALGKDSDLVS KHVGADSTLY FKDLGPQISW SLVFICEYAG PLFVYPIFYF LSNLIYGTDS 120
  121 PKSFAQKVAL VCYSLHYIKR IYETIFVHRF SHGTMPIFNL FKNCSYYWGC TAMVSYFVNH 180
  181 PLYTEAPIER VYLGLGLWII GEVFNYICHI QLRNLRPAGS TERKIPRGLL FEFVSCPNYT 240
  241 VEILSWIGFS ILTQTLTSWI FALMGAAQMW IWAVGKHRRY RKEFGDKYPK SRKILIPFLL 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	89	0.85
Transmembrane Helix	90	109	0.56
Non-Cytoplasmic	110	190	0.45
Transmembrane Helix	191	210	0.84
Cytoplasmic	211	227	0.72
Transmembrane Helix	228	249	0.71
Non-Cytoplasmic	250	254	0.72
Transmembrane Helix	255	274	0.92
Cytoplasmic	275	300	0.97