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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60474361
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEEEGKKPS PSPIINNGNN IGDGDKNNNN NNNSILKNNN NNSNNNNLND NNNGIRERRV  60
   61 SKIVNINESI NRSSPNLNAD KIIPKVDFNK SRFDDEGYLK QSSFYNESFR DQNEVYEQQL 120
  121 TGNHQKDTVL GVSSHLENSD SDSDSDGSIE EIDENSFENN DIVNFEEDKK KRLYLKAYKE 180
  181 TYQRVDFVLE HINIFLSIVS IGLFIALSYL PNMVKYPITQ DEITNNFRVR QINHVVVAIS 240
  241 AYFCFDFVRI FIFAKDKIKF FKKKNTILDI ITIVPILITM IPSIPVTPLG FLRVLRILKA 300
  301 PRLFKLHGAT SVLKQIIQLI LSIIILIILF ASMICEIEGI KFHDSIYYAV VSLSTVGYGD 360
  361 ITPRSTLGRM VAILMIMVAL GYLPVQTGKL IAVLSATKSW NGEYKPSKKK KFVTIIGNIF 420
  421 ESSLTTFLRE FFFNSRIGEM PVIILSNVDQ PSFWDSLTNR IKKRYFFFKG SIGSQQDVQR 480
  481 VKLDRSKAVF IFSKKSLNHS QQDDNENILR VMSVRSFNAT IPIFAQAMVP RLKRKMIAAG 540
  541 ATQVVSVQEL KMNLLAQSCI SPGFITLVMN LLRSDLEKYN DSDEYASGNS YEIFTQPFSS 600
  601 AFYGLTFSQV VQLVYETFGM IIFGIEVQSG DKRRIKINPK NSFIIQEGTY GVLLAKNKLQ 660
  661 SKRIKFCGTE LVKRKIEAIK QTNLRNTEIG ILDKDCKLVW EYDPIDKSYQ CKLKFIPKSH 720
  721 NKNTNKKSLR RMLLEKKRDI LNGNTDSSDD TISKNTFQKT TSIGGGLTTD TNGTVGVDNF 780
  781 TFLTNGQHRQ QQQQQQQQHH HQHHKRNSSI DFEDNTTNNI AAASNNFNPL NSTDIHLHQT 840
  841 IGRPPSMDFS TTTGNSTSLM TDIPQPPSND LFSSRLPKRF WGSHFLDDCI VDSVESMDNI 900
  901 RNHIIIAGSS VDCIENFISP LREGHIRRYE PIVILTPKLT EDQWKYIESY PEIYVVEGKC 960
  961 YEFSDLKRAG VYKCSKIVVL THDANSEELL FNDRETLLSM VCIREVARKN IKIFPIYEIS1020
 1021 EPLNMKFLPG NFNWKQNQPF YHSPSFAAGN VFLSSVFDSL LCQCFFNPHL LSMISVLVGM1080
 1081 NTDNQFKKSV TKVFQVPLPE HFYHHRFGYL FESLVESNII CIALFRTHHK GGGANKNTVN1140
 1141 GASSPNQDLN NSYNSTPIDA SGTSQKTNMN TPINPVVSGL PPHLIDDLDS HNDEITRYVL1200
 1201 TNPSPSTMLR EDDRLFILIR FQSNSVYDQH EDHSYEGASS SNSN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle