YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDSA_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTDNIRNRK EQLKKQEKKD FDSSKDEETS TSDEEESSGG NRSKIAGKEN HQNKNIINQK  60
   61 TNNNNNNNNI KEKDIIDSSV NNADNLKATD PPSAKYKKLA IRSVMGAFMI GFFTIVLSTD 120
  121 HFIVALFVIA LQLLVFKEMI ALRYIEAKEK KIPHFRTLNW FFLFTSFFFF YAKPILITLA 180
  181 NYYPDIFQHF VRYHLWHSFS LYCIGFVLFI LTLRKGVYRY QFSQLTWTLM ILMMVVVQSN 240
  241 FLISNIYQGL IWFILPVSII VCNDIFAYFN GFFLGKKFIN RPLMKISPNK TWEGFIGATG 300
  301 WTLLFAYYFC GFLLKYDWIV CPKGNTGFME SLHCTRDPVF LEKEFIFPPE ITTIAFKYLG 360
  361 ITLLPFTYIP IQFHALVLAL FGSLIAPFGG FFASGIKRAY KVKDFDTIFP GHGGVTDRTD 420
  421 CQFIMGLFIH VYYNTFIKTL EIDPTFIWQN IMMLSMEEKM VIYEKLKQSI EFTTGTITA

Type	Start	End	Confidence
Cytoplasmic	1	98	0.96
Transmembrane Helix	99	117	0.92
Non-Cytoplasmic	118	121	0.79
Transmembrane Helix	122	141	0.90
Cytoplasmic	142	156	0.86
Transmembrane Helix	157	177	0.90
Non-Cytoplasmic	178	192	0.87
Transmembrane Helix	193	213	0.92
Cytoplasmic	214	224	0.78
Transmembrane Helix	225	243	0.96
Non-Cytoplasmic	244	250	0.77
Transmembrane Helix	251	274	0.91
Cytoplasmic	275	291	0.94
Transmembrane Helix	292	312	0.89
Non-Cytoplasmic	313	370	0.95
Transmembrane Helix	371	393	0.91
Cytoplasmic	394	479	0.97