YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60474282
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISNNKKQA VDGANQQQTD KYPSKSGLPP TIGNGPMEKY EPKDEYIRVD SMQQHWIRRK  60
   61 LISDKYPEIL NLPTNHTPTA FWVIGLVASL IITAKLLENS PIWLIVVVAY IFGATVSHAL 120
  121 WVLIHELTHD LVFEGSFMNS VFLLIADLPH IVPAGVSFRH FHRLHHSFLN ETYTDPDVPV 180
  181 PFENKLFGHS IVGKAIWFCL YSIVIACRSV FYPLKNQSPF SMWLVANYIC NITFTYVIFQ 240
  241 WVGVYGMTYL VLSSLMSVGF LLHPLGARWI AEHFAVTQSE QETYSTYGLI NTIGFNIGYH 300
  301 NEHHDFVRVP YVYLPTLTKV AHEFYKGGLK YHTSYWRVLY EFLNQDGFTF NSRVVRNPKV 360
  361 K

Type	Start	End	Confidence
Cytoplasmic	1	77	0.84
Transmembrane Helix	78	97	0.85
Non-Cytoplasmic	98	101	0.74
Transmembrane Helix	102	124	0.92
Cytoplasmic	125	134	0.66
Transmembrane Helix	135	154	0.80
Non-Cytoplasmic	155	190	0.80
Transmembrane Helix	191	212	0.88
Cytoplasmic	213	219	0.83
Transmembrane Helix	220	239	0.87
Non-Cytoplasmic	240	245	0.66
Transmembrane Helix	246	267	0.87
Cytoplasmic	268	361	0.94