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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60475080
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIDSKNLIT NKKRLIFGAV FILLIFYFIF SSDEENFRER SQRGVGGVVG GNNNNKGQQP  60
   61 QQQQQQQRAE WSDSQLTKTI KENMKLNNAT IESDLYKVKW LDEIRPDNER VRKFRIKKNS 120
  121 DITANLDRLY DHPPIAIVTS NKPKHLDRLL ANLINNCNAN IDRIKVFNDG KSVQNILSKY 180
  181 NVTKEYRISK KSQEGSNSNQ VLSNEEKQYY MNSHYKEIFS FMFNNETSDK VIFLEEDLIM 240
  241 SPDSLEYFNH LSKLMNYDPS IFGISAWNDN GFKWNVEQSR SNFENKFSFL RQDHFGGLGF 300
  301 LISREIYKKR IEPNWQIEST TPWDVIVQQS MRSGDSCIFP EIPRSQHAPL LERNYDSIFK 360
  361 DQPEKDGWGN YNFYLPKITT IHTYHMNLSK YLSPEYDLQV KKRIMRATEV DTLNSIPMMF 420
  421 STSNRFVYYV PAKSNDDPRW DAVIDKLQMV GRGNGGAVRG IYKGVIETTF FGKRVYLVGT 480
  481 YSPFYSQQQR NKSQRILFND FPKEEFDPTI TNPLTSTMLF RTDKDLSLDI TLAEKVFSCK 540
  541 DFCEKHKVSC LESDMMLLTD STIVLLQLEQ HCSQVNYIPS NNTDTFYPIK DKDGICWTTN 600
  601 QYSKLSCTSK PPKKSEASRI CICKDKSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle