YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG3_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.83
Transmembrane Helix	17	37	0.53
Non-Cytoplasmic	38	99	0.65
Transmembrane Helix	100	120	0.89
Cytoplasmic	121	174	0.72
Transmembrane Helix	175	195	0.90
Non-Cytoplasmic	196	215	0.76
Transmembrane Helix	216	234	0.88
Cytoplasmic	235	240	0.72
Transmembrane Helix	241	263	0.84
Non-Cytoplasmic	264	292	0.94
Transmembrane Helix	293	314	0.92
Cytoplasmic	315	335	0.94
Transmembrane Helix	336	356	0.94
Non-Cytoplasmic	357	365	0.77
Transmembrane Helix	366	385	0.80
Cytoplasmic	386	399	0.67
Transmembrane Helix	400	423	0.80
Non-Cytoplasmic	424	446	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIENKVLPFI KNNQIKCFYT LASFLMIYEL CINKIIIDYV KYTEIDWSTY VQQVEVFLKG  60
   61 IYDYTKIEGD TGPCVYPAGH LYVFSLLYNL TENGLNILKA QYIFAAIYIL LTFIVFSIYG 120
  121 ESIKESIKQI TNKSNNNNNN NNNNNNNNNN VFLKIPFYII IFLCLSKRIH SIFALRMFND 180
  181 CISMLLFYIS LYLIIKGRWN LGCLFFSCSV SVKMNVLLYS PALLFLLLST FGIWRTIPKL 240
  241 MICGLVQVLL AIPFLMVNPQ GYLLRAFEFS RQFLYKWTVN WRFLPEHLFL NKSWALFLLS 300
  301 IHLLFIILFF IKYIKKEQGG ISNILKRGSI NQNPKLLSVN YILLIMFTIN LIGVTFSRSL 360
  361 HYQFYLWYFH TLPFLLWSTN YNLFLKIGFM CITEYAWNTY PSTSTSSLML FISNFILLIQ 420
  421 LYFQPTINSL REDKNNSSGL KKKKTK