YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPTC1_DICDI
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLFDIYNNI LYYTKEFIVT STSPNLFIHG LMAVFIIYLL TKRPFKPRQN DTLTKAEEDE  60
   61 LIREWSPIPL TPKSNPLEVL NQTELIIQES EGTHVTINNK KYLNLARSNY LGLINNPEIN 120
  121 KISENAIRKY GVGSCGPRGF YGTIDVHLDL EKKTASFMKT PEAVLYSSAY ATISSAIPSF 180
  181 SKIGDIIIVD RGVSQPVQVG VSLSRSRIYY FNHNDMDDLQ RVLEQTQFKG SKAKIVRKFV 240
  241 VIEGLYYNSG TIAPLPQILK FKEQYKFRLI MDESHSVGVL GSTGRGLTEH YNIDTNLVDI 300
  301 LTGSYGNSFS SGGGFCCGSP EVVYHQRLNG VGYVFSASLP PFLACSSTKA IEMLEENPKM 360
  361 LEMLHSNIGE LYQGLNKSGA LNGLLEITSL PISPVIHLSL LDSKSNKSNR INDELLLQKI 420
  421 VDKAMDYGLL LTRAKYVSAE KFIPKPSIRI SVSSNLSSDQ IKQSIEIIKK CTSFVLESN

Type	Start	End	Confidence
Cytoplasmic	1	16	0.55
Transmembrane Helix	17	40	0.74
Non-Cytoplasmic	41	479	0.75