YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHG1A_DICDI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.80
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	277	0.99
Transmembrane Helix	278	300	0.92
Cytoplasmic	301	343	0.96
Transmembrane Helix	344	367	0.89
Non-Cytoplasmic	368	374	0.76
Transmembrane Helix	375	397	0.89
Cytoplasmic	398	412	0.87
Transmembrane Helix	413	435	0.90
Non-Cytoplasmic	436	445	0.81
Transmembrane Helix	446	467	0.88
Cytoplasmic	468	499	0.85
Transmembrane Helix	500	521	0.87
Non-Cytoplasmic	522	532	0.81
Transmembrane Helix	533	558	0.86
Cytoplasmic	559	566	0.90
Transmembrane Helix	567	589	0.86
Non-Cytoplasmic	590	607	0.86
Transmembrane Helix	608	631	0.90
Cytoplasmic	632	641	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINKKQIVF FILFSIFLNH VNGIFYLPGM IPHDFAQGEE GAIKVNKITS VHTQIPYKYY  60
   61 QLPGVCQPKE GIIDDTENLG EILLGDRIEN SDYTFNFLTD GGKCKVINSE SCSPIIKKED 120
  121 LKVLEDRIQN QYRVHWLLDG LPVRQTGRLA SDPGFDLGFM TLAEGQTVAT AEKYLNNHLE 180
  181 ITIFYHSNPT DNTSRIVGFE IFPTSRQYKK VENWKGDTGD DCPQYGENFE QLSVSVKEGE 240
  241 DQERFVLWTY EVKYTPSPVL WNKRWDIYFE SNDNSVHWFS ILNSLMIVFI LTVMVAMIII 300
  301 RTLKKDIRRY TSIDTSEDRD SQEETGWKMI HGDVFRPPSH PMLLSVCIGS GVQIFSMTLI 360
  361 TMIFAVLGFL SPANIGGLAT ALIVLFVLSA MFAGYFSTRV FTIFKGRNWK KNTIYTALSM 420
  421 PGIIFGIFFF VNMFLRGAKS SAAVPFGTFA SIIAMWFGIS VPLVFLGSYF ASKKPVPEDP 480
  481 VRTNQIPRQV PDQIWYMNPY LSILMGGILP FGAVFIELHF ILTSLWDNQF YYIFGFLFIV 540
  541 LMILIVTSAE ISIVMCYFQL CAEDHHWWWR SFLTAGSSSL YMFIYSVSFF RYLGITKFIS 600
  601 SLLDFSYSFI MSLAFAALTG TIGFYSCYFL VRKIYSSIHI N