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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60475480
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLIQVLNDR INYETILSQV EIIFKNNSKE SILEFIKYYS SKDVYELIGN LYCDHMVIMF  60
   61 YILYSSDTKD QYLEFLNSIN PYCCSSSSPA WSSSIDSKQN ENGSDENGAD EKREKYLHIQ 120
  121 SIKSVAVKYH HHHHHHYHRN NNNQLLPPSA IRQSQSHIPK QTSFHDFNLC HNPHNEINPF 180
  181 ADTSNNPNNG ASGSGNPMSK SGGLSKSRSG SQHEIELGSS SSNLKKSKSM ESVEFITEPQ 240
  241 IPLYYSMVKE KERQREVKLR NRIKNKLKKN KSNTTTTTTT TDVGASPSTI EPIDGNDKEP 300
  301 MSAIDLAQDN IEKKTQHKPK DLATQTTEEL THDHTLPLEE LIIKLKTNIN INDPRHSFGL 360
  361 SREFASERLE IDGKNALTPS KPVPKWVKYL KEFLGLFPIM LEVGGILSII AFGIDTETGK 420
  421 DNLYLGIILW IVVFLTCTFS YIQNSKSTGV MEGFKKLAPS STKVLRDDNL IEIDSEDLVV 480
  481 GDVVIVRAGD KVPADLRVIA SHHFKVDNAS LTGETEPQTR SPNCTDENPL ETQNLTFYGT 540
  541 LACQGDCVGV VIATGDRTVI GKIAKLASNS KPNSTPMKEE IEKFIKIISI VAFSLGAIFL 600
  601 AIGFGRSVEW ILVIIYTIGI VVSQVPEALL PTLTVTLNLT AKRMSRKNVL VKNLLTVETL 660
  661 GSTTTIASDK TGTLTQNIMT VVHLWYDGTI YSCNSLTASN FFNAQATTFK KLYQVAALCN 720
  721 RTVFDKSENQ DDIPIQLRKC IGDASESALL KFCEQVENVE QYRDRFPKYF EIPFNSVNKW 780
  781 QMSVHTIGDD GEFFMVMKGA PERIIKMCNR ILIEGEEQEL DEKHLQNFQS SYEHLAGKGE 840
  841 RVLGLAYLPL DPQQYPNNYI FDMEEKNFPT KDLVFVGLTA LMDPPRPGVP EAIRTCKEAG 900
  901 IRVMMVTGDH PLTGTAIAKQ VGIIETDETL NDIAEREGVD VLSLDFSRGT SIAITGSMLD 960
  961 DLTSEQWDKI LSLRELCFCR TSPEQKLQIV AHLQKRGEIV AVTGDGVNDS PALKKADLGC1020
 1021 AMGITGSDVA KEAASIVLLD DNFASIIAGV EEGRMIFDKL KKSICYTLSS NIPEAIPFFC1080
 1081 FFVLQMPVAL SGILILCIDL GTDLIPVISY AYEGSETDLM KRKPRNVKKD KLVSLRLAIF1140
 1141 SYLWLGCWQC AAGFLNYFLL FKDYGYSASD LYNVSSTYFK KDAPLYGGHD DAKQIQILNE1200
 1201 AQTAYFIAIV ISRVGACFCA KTRIISIFQQ GFGNMVFNFG VCSMLAIALF IVHVPGVRTF1260
 1261 FGCTIVSYKY WLIPIPFAVF LVASNELRLW LIRRYPKSTF ANLCAW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle