YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60475460
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.93
Transmembrane Helix	42	64	0.74
Non-Cytoplasmic	65	104	0.76
Transmembrane Helix	105	128	0.80
Cytoplasmic	129	148	0.69
Transmembrane Helix	149	167	0.96
Non-Cytoplasmic	168	177	0.53
Transmembrane Helix	178	196	0.76
Cytoplasmic	197	200	0.70
Transmembrane Helix	201	218	0.88
Non-Cytoplasmic	219	235	0.85
Transmembrane Helix	236	261	0.83
Cytoplasmic	262	270	0.80
Transmembrane Helix	271	289	0.97
Non-Cytoplasmic	290	323	0.92
Transmembrane Helix	324	346	0.87
Cytoplasmic	347	425	0.98
Transmembrane Helix	426	444	0.94
Non-Cytoplasmic	445	450	0.83
Transmembrane Helix	451	473	0.91
Cytoplasmic	474	483	0.85
Transmembrane Helix	484	507	0.87
Non-Cytoplasmic	508	646	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNRKPITN NNSNNSNNNN NNGKIKRRER ILNRQKEQIE QFYTDFIIFV VMFIHVVVCP  60
   61 FTKVEESFNL QGMHDIINIG NKGSDERGVS FEYDHLEFPG VIPRTFIGSL FISSLSYLPL 120
  121 NIFFGSSATE FISKLFDNQF SGTTKMVQLY FVRLMLGTIS CISIMIFKRS ISKRFGNQVA 180
  181 FWFTLITVSQ FHLMFYISRP LPNIFALILV IIGYSFWLND DGNGNGNGSI DWMIMVLTIA 240
  241 IFIFRSEILI LAGPIVLSCL FLQKNLKFHR FLIIGIFTAL ISIIFTVFID SYFWRRILYP 300
  301 ELEVFQFNTI ENKSSEWGTL PFHWYFSTAL PKTLAFTLLF FFIGLISKYN NNNNNNNNNN 360
  361 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 420
  421 NNNKSTPITF LLPILLFIGI YSILPHKEIR FIFYSIPIIN LISAIGATKL WNYGKSRKNQ 480
  481 LFKLLISLFT IGILIGNSMI SLFSLYASSL NYPGGHSMIS LHKHLNLTDE MGLLLLLPPH 540
  541 TNADVDGDDE NQGIIDCKVH IDNMAAISGV SRFGELNDFC VYSKKERDVN FNDFNYLIAP 600
  601 NTSTTQLGFK EVDSISAFDH IKLKKTFPFF EIVESPTLYI MEKINK