YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARSB_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.59
Transmembrane Helix	39	61	0.82
Non-Cytoplasmic	62	65	0.47
Transmembrane Helix	66	87	0.90
Cytoplasmic	88	94	0.52
Transmembrane Helix	95	114	0.89
Non-Cytoplasmic	115	135	0.52
Transmembrane Helix	136	158	0.58
Cytoplasmic	159	173	0.65
Transmembrane Helix	174	196	0.80
Non-Cytoplasmic	197	214	0.89
Transmembrane Helix	215	238	0.89
Cytoplasmic	239	373	0.98
Transmembrane Helix	374	394	0.91
Non-Cytoplasmic	395	420	0.84
Transmembrane Helix	421	439	0.62
Cytoplasmic	440	459	0.66
Transmembrane Helix	460	483	0.87
Non-Cytoplasmic	484	499	0.62
Transmembrane Helix	500	524	0.88
Cytoplasmic	525	538	0.65
Transmembrane Helix	539	561	0.90
Non-Cytoplasmic	562	563	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDINSSSSS SSSNNNNSNN NNNNNNNNNS NVFEINSSIK PYFTCIVFVI SLIFICSSKN  60
   61 IVTKHLPIGR AGSSIIGATL MVYFGIIQPK EIGSVINWDT IILLMSMMML SNYMEQANIW 120
  121 GMASKILLWK CKSTSIFMVR VCLISSIMSS ILTNDTVCVT LTPIVISACK STNLTFFPFL 180
  181 MAIATSANIG SSALPVGNPQ NMIIATAGGL NFFNFFKVSI VSSILGVCLN TILLLLYFKK 240
  241 DLKNLNSNFN QLIETVNPKV EEIDNNHHDD DGANNQSKNE KEMENINKEV EEEQHNNDDD 300
  301 DDDGFNENKN NNNNGGHAIL LVASSMDSID LSDCSIINKD KKKKENFIEI YFNSKEKSIE 360
  361 TIVNIIKLIF KFRVAIILTL VLIGFFIGMH MGFTVLFGVS ILMICERKDI TDIINSVDWE 420
  421 LLLFFSGLFV LVEGFDRQFE KEAWTILEPF VPIDSTHLNV LKIFIFSILI LVLCNILGNV 480
  481 PLVLSLSPRL LEALAPDFTW ILLAFVSTVA GNLTLVGSVA NLIVAEKSKS YHEIGFLEYL 540
  541 KFGVPSTILV ILIGVPIVVL IGK