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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60464579
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRNIDINNN NNGGIDYSIT NEELSGYVQE EDYEAIKQRY GGVSGLSKRL GSNEENGLSQ  60
   61 QEATNEERIH RFGINKMNEI AQKSLFFFIW QAIHDKTLII LIVSAVVSII LGLTVEDRKT 120
  121 GWIDGTAILV AVIIVVLVTA GNDYNKEKKF RKLNTIRNER NVSVVRGGHL ASISVYDVVV 180
  181 GDVVKLETGD TIPADGLYIA GQSIAVDESS MTGESDQKRK SNDRPFFLSG CQVLEGSASM 240
  241 LVIAVGPNSQ WGKLKLLLQS PDSDTPLTQK LEKLAETIGK FGLIAAILTF GVLLLKYVIV 300
  301 FVKDGHTWHW SELGTIVGFV VTAITIIVVA VPEGLPLAVT ISLAYSMMKM MKDQNLVRHL 360
  361 EACETMGGAT NICSDKTGTL TQNRMTVVKK IIGKSINSDD FVENGKSSMS DQQRDIYSSP 420
  421 SSSSSRHNVY NDSGKVNQHD CEMEMLSNSR ILTLLAEGIS LNSTAYIEKH TDRLNDHIGS 480
  481 KTECALLEWL ETMPNQSYET VRKENKDRVV KVYPFSSEKK MSAVLMNQNQ NISGGLIIYV 540
  541 KGAAEIVLNN CTNIVDKNGE STQMSRDEKM LLQKDIEIFA SEGLRTLVLA YKEINNEPSS 600
  601 EDEAKVIYTG LTFLGLVGIK DPVRKEVPRA VKRCQGAGIF VRMLTGDNIL TAKNIARECG 660
  661 ILKDGGVAIE GPQFRLLTDD QLDTIIPHLQ VIARCSPTDK FRLVHRLREL GEVVAVTGDG 720
  721 VNDAPQLKEA DVGFSMGIAG TEVAKEASDI VLLDDNFNSI AKAVIWGRNV YDSIRKFIQF 780
  781 QLTVNIVAVL IAFVGSITNG ESPLRPVQLL WVNLIMDTLG ALALSTEPPS EELFNRRPYG 840
  841 RFDSLITYRM WRNIIGQSIY QIAFLFSIMY SAASMVELFD LPRVDQWTTN DKTVYHTIIF 900
  901 NTFVFCQFFN EINCRVLDNQ LNVFRNIHKS YVFVGVVSFC IFIQVILVEF GGEFFGTRHL 960
  961 DYKQWFFCII IGFGSLIWGF CLRLLPLKDR TNTNIEVKPL DVKNLGIDVD IESQPLLGGK1020
 1021 SNWKKARNVF TQINVISAFR NQPRLKRTKS LFATKSSDSN ARYNRNLNGS GYGSGSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle