YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMCC_DICDI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.94
Transmembrane Helix	56	77	0.83
Non-Cytoplasmic	78	110	0.94
Transmembrane Helix	111	131	0.96
Cytoplasmic	132	150	0.88
Transmembrane Helix	151	172	0.94
Non-Cytoplasmic	173	197	0.94
Transmembrane Helix	198	220	0.89
Cytoplasmic	221	239	0.87
Transmembrane Helix	240	258	0.93
Non-Cytoplasmic	259	265	0.77
Transmembrane Helix	266	286	0.94
Cytoplasmic	287	295	0.87
Transmembrane Helix	296	315	0.93
Non-Cytoplasmic	316	321	0.82
Transmembrane Helix	322	342	0.91
Cytoplasmic	343	723	0.92
Transmembrane Helix	724	746	0.92
Non-Cytoplasmic	747	975	0.94
Transmembrane Helix	976	999	0.91
Cytoplasmic	1000	1156	0.99
Transmembrane Helix	1157	1180	0.91
Non-Cytoplasmic	1181	1338	0.94
Transmembrane Helix	1339	1362	0.88
Cytoplasmic	1363	1400	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHKSTTKS SSSGSSMSLI LGFSKSMEKG NYNFSKENKK NRSFGVLYAM IKGNTFPRIL  60
   61 TIISLLIEFC QLSSFGFKQQ YPWGGDAGYY LKRIMSPVSH PSNLVGYNGF TIFFWIVIGL 120
  121 LLLGFFNIWY VAYQFYRGKI ANIWIIRTLR WFVSTTVAVL FIPIISLLLI GLDCDYSQGG 180
  181 ILKTFSNDNI YCFKGANLSI AIVSIILIIV FSIVGFTSSA TYYEYDTNVK SRFSKPHARF 240
  241 DVYILFVKLI LALLNSLVDF SPWTTSIVYF ILSITLVFGS IIILPYNNQR LNQVKSGFYT 300
  301 TVFWVSFMTL VTMGINDETT ATTCYITIVG AFFAFPIGYF SNRFYYNWLS SKIDQLKLPT 360
  361 SSSTNDFNEI TKNEKSKTGD SKEKESSSPS KVTWGKQPIT LGSKRQIIFP FFQNKFVMSF 420
  421 FVEIMVRKLL RSSNGSNGDD GISSNSNESI EHANNLYQCG LQYFPNSDLL WMAYCNFLFT 480
  481 VRKDRHIGYA ALEKLRRMKP SFDVRFFIYQ RDKEREQIMD SDLRGPEHTG KIQDFVSYME 540
  541 FKKLYYGAKR HHVKCLTYIK KFWGLLLHET VDLHRLSDLS GRIATTENKA NESYERLLAL 600
  601 NPNSVRVLRD YSQFLEEVVK DTESSYKLQK KAEAIEDIMS KSQTTDFKTI DIKNLDNSDT 660
  661 ELDQVLKQES NAIQLAKIDA DIERSGSKSG SSKSKDDSSE SSSSSKGRRG KYKEFQQSNA 720
  721 INKLSWLMIG TTACCIIFLI VMLIVLRDLS VKHTHSYQGI ISITDCASEA VSIAINLNTM 780
  781 QAISISAGSV AFPFEAAEAM ITQYRKQNDR SLIIMKNIHD AIYWGEGDPT SYVGDNLSKL 840
  841 KSINGFDVFD IGSTIFSFEE FNRSSTLVDN KEMIDIYSTP SVNMTILVSP PGTNSTNYIT 900
  901 VTQTYNAWKA GNSFYESALI ANKMSVQDIK DRAVFDPDFK FIILNAPSNI PEMYMKIQQV 960
  961 YIKSLIDDIN TTLDTMLYVW VAIFCFLIIL GAVLFRPIVT KISREKIRTL VLFSLAPKDV1020
 1021 VFKLSSKKIK MTSLDSGSER DNLFDTTDDD AADGIDNHEH LQVDERKKND DIIDDGSIVN1080
 1081 RSINFGSHRR PLMNSTNVLA STTTINRGTI SNRLNEDHDK VPLIENSISN NNKGYGWDGK1140
 1141 SKRNLNKKSL RSVLRRLHWS YVLAIFLLFG FITMGLWVTY SVVHDNTQSG YVLGKSCSRS1200
 1201 LDSRIINYYI AELYTFDNDA NENEALEAVL QLQSNHQSLP YLEDVRPLME GSYGCWMLNK1260
 1261 SNCITSDSIY YNDVSIGLDW LVDQYTKHSV SLVNTDPSLL STSPELGWMQ AIGSDVVFQG1320
 1321 LDTATFTYFQ YYLSQKDWAT KVLTSVLAIS CVLLLVIHLL LFRPFMNHLR IQHIHTLALL1380
 1381 RLAPDDIRFM EVSDKVIDED