YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TMCB_DICDI
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKSGSSK YSSGSSISLI MGFSRSLEKG SFGVLYAMIK GNTFPRILTI LSMLIEFCQL  60
   61 SSFGFKHQYP WGGDAGYYLK RIMSPVSHPS DVFGYLGFTI LFWIAVGLLI LGFLNIWYVA 120
  121 YQFYRGKIAN IWIIRTLRWF VSFSVAVLFI PIISLLLIGL DCEGSSEGTI LRKFDNETIQ 180
  181 CFRGANLPIA VISIILIVVF SIVAFTSSAT YYEYDTNVKS RFSKPHARFD VTVLFAKFVF 240
  241 AFFNSLVDFV PWLTSITFFV FMVILTFGSI IVLPYNNQRL NQVRSGFYTV VLWVSFMTLV 300
  301 TMGINDETSP ATCYITIVGV FFAFPIGFFS NMFYFKWLSS KVSDIQILNQ SPSMDLKDAN 360
  361 KKGKRNSVEK ESSPTSKVTW GKQPITLGSK RQIIFPFFKK KFVMSFFVEI MARSILNNNN 420
  421 EGVSSSSNES IERANNLYQC GLQYFPNSDL LWMAYCNFLF TVRKDRHIGY AALEKLRRMK 480
  481 PSFDVRFFIY QRDKEREQIM DSDLRGPEHT GKIQDFVSYM EFKKLYYGAK RHHVKCLNYI 540
  541 KRFWGHLLHE TVDLHRLSDL SGRIATTENK ANESYERLLA LNPNSVRVLR DYSQFLEEVV 600
  601 KDKESSYKLQ KKAEAIEDIM SKSQTTDFKI SDIKAIDSDE DDIEKTLQEP TAIQLAKIDA 660
  661 DIEKSGSKSG SSKSKDDSSE SSSSSKGRRG KYKEFQQSNA INKLSWLMIG TTCCCIIFLI 720
  721 VVLVVFRGLE VKHTNAYQGI ISITDCANEA VQMGMHLNAM QAYALVAGVG NNTVEASLIE 780
  781 IARRRALVKR GIIIMKNIHD AIYWGEGNPV SYVGDNLSQL KARDGYDIFD IGSVIFTFDQ 840
  841 FNRSSTLLDN KQMIELYSQP SVNMSVLVAP PGSNTTSLYT QTYNAWKAGN AFIESAMLAS 900
  901 DVTFDELRYS VNQNPNFKFV TINAPVIMPD IYNKVQTAYI DSLVSDITGT LDAILYTWCG 960
  961 IFAVLFLICA VLFRPIVRKI SREKIRTLVL FSLAPKDVVV KLSTKKIKMV SLDSGSERDN1020
 1021 LFDTTDDDGR DDHLGEDDNN IQTPVGDNNN NNNNNNNNNN NNGSISSNVT KSDGEIGSDG1080
 1081 VRSSSGSNVL NTSSPYRDRR PLMDSTSVLA STATLNNRNV RLQAKDEEIT NGGGERKGSD1140
 1141 ATRTALSEDK KYGWDGKSKR NLNKKSLKSI LGRLHWSYIL ATFLLFGFIT MGIWVTFTVV1200
 1201 FNNSQSGYTL GKSCSRSLNS RVINYYVAEL YTYSQYVSTQ NMVDAITELQ SSHQSLPYLE1260
 1261 EVRPLMEGSY GCWALNKSTC LPPSSMYYEE VNSGLDRVVD SLAKKAINLA YTDQAALLDS1320
 1321 PDLQWFLALI DYIFIGLDTA TFTYFDYFLE KQEWANTVLT AILSVSCVIL LVVHVVLFRP1380
 1381 FMNHLRIQHI HTLALLRLAP DDIRYMEVSD KVIDED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle