YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGM_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRVKTVMTN ENNKYDFIFK GINLTKSIFI VGLVIRLVLI VFAEWQDANM LVKYTDIDYV  60
   61 VYTDASRAVV NGLSPYDRST YRYTPLLAYL LVPNILIHPA FGKLLFVICD MIIAYLLKGI 120
  121 LLERFPKITS RTLLICLASW LLNPFSINVS TRGNAESVIG AMVLASFYFL TKKNLTLASI 180
  181 FYGLSVHFKI YPIIYSIPMY LYIDENFFSR KPSEYTSLNN NFKNIFKNFF NKNRLKFFLI 240
  241 SAFTFISLTF IMYLIYGYIF LFETYLYHVI RADNRHNFSV YFYQIYLNTP IVETVGDLVG 300
  301 KVNGSNMIVA LASFLPQVIL LLAITLVYFN DLEFCLLLET ITFVAFNKVC TVQYFIWYYS 360
  361 ILPLVIPSSS LGLVQYIILF AVWMGSQGLW FYSAFNLEFL GLQTFWNIWV AGLLFFIANI 420
  421 YILVKLILNH NPIKVNQYLK SK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.86
Non-Cytoplasmic	44	94	0.95
Transmembrane Helix	95	117	0.85
Cytoplasmic	118	127	0.81
Transmembrane Helix	128	147	0.80
Non-Cytoplasmic	148	154	0.61
Transmembrane Helix	155	171	0.64
Cytoplasmic	172	236	0.74
Transmembrane Helix	237	260	0.90
Non-Cytoplasmic	261	307	0.77
Transmembrane Helix	308	329	0.90
Cytoplasmic	330	354	0.49
Transmembrane Helix	355	385	0.68
Non-Cytoplasmic	386	404	0.54
Transmembrane Helix	405	428	0.85
Cytoplasmic	429	442	0.67