YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60464907
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.95
Transmembrane Helix	35	54	0.88
Non-Cytoplasmic	55	58	0.71
Transmembrane Helix	59	79	0.84
Cytoplasmic	80	87	0.74
Transmembrane Helix	88	107	0.91
Non-Cytoplasmic	108	125	0.75
Transmembrane Helix	126	147	0.76
Cytoplasmic	148	156	0.67
Transmembrane Helix	157	177	0.88
Non-Cytoplasmic	178	187	0.53
Transmembrane Helix	188	208	0.70
Cytoplasmic	209	328	0.97
Transmembrane Helix	329	348	0.94
Non-Cytoplasmic	349	355	0.74
Transmembrane Helix	356	378	0.88
Cytoplasmic	379	465	0.63
Transmembrane Helix	466	487	0.90
Non-Cytoplasmic	488	493	0.52
Transmembrane Helix	494	519	0.63
Cytoplasmic	520	701	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSPITSCT EAIEMISKLP QEVFEKSTRT ATKKLLASIG LVTIGTYLVY ALPWYLLPIG  60
   61 WIFMGTACCG LFSVGYACGN DLFFKNKFVN YVVGTICMLP LMYPLAYWKK RIEKKATASR 120
  121 DFVREIASGN FWFLSSLLQW LSLNFSFKFS KSMMVSVSFL YVFIALFFPI MTYSMGIWGL 180
  181 FKYYLIPLFV YHFWMSTFLK ASSLSSVASK PTFFALPRWV QYLTQDFNIG VTLSHMSQNL 240
  241 GVPSYKWKDA YNLLKKEYEN ITELSFASLL INLPPVVQHV EPKNSTLSVE LDEKKQDETS 300
  301 SSNLFDPVTH PFGLLKVDPS KPFHERINWN VAIFLCGTPF LALYGILTTP FITKTYITAF 360
  361 LAYYISGMGI TAGYHRLFSH RSYRASLPVR IVLMLMGTST FEGSVFEWCQ DHRAHHRFTD 420
  421 TDKDPYNVKK GLFYSHMGWM LFKRIPGDAD ISDLKADPVL RFQHKYFIPL AFSLGWFLPM 480
  481 FICGFGWNDW KGGFFIAGVA SKVLMMQCTF CINSLAHYLG EATYTDQRSP RDSFITSLVT 540
  541 FGEGYHNFHH EFPYDYRNGI HMSAYDPGKW LINFLSWFGF AYELKRFPSE LFAKGKIQMQ 600
  601 EKTIKKLRDQ LYWGKPLDQL PSFTRAQVKE KCQKEKKQLL IIEDVIYDMS EFAEKHPGGK 660
  661 QYIDDYIGKD ATKAFNGLVY NHSFAARNYL DLYRVALLSN E