YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60465069, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.96
Transmembrane Helix	38	57	0.85
Non-Cytoplasmic	58	92	0.82
Transmembrane Helix	93	109	0.80
Cytoplasmic	110	116	0.83
Transmembrane Helix	117	137	0.90
Non-Cytoplasmic	138	143	0.79
Transmembrane Helix	144	165	0.92
Cytoplasmic	166	175	0.88
Transmembrane Helix	176	199	0.91
Non-Cytoplasmic	200	209	0.83
Transmembrane Helix	210	231	0.93
Cytoplasmic	232	262	0.96
Transmembrane Helix	263	283	0.89
Non-Cytoplasmic	284	307	0.92
Transmembrane Helix	308	329	0.93
Cytoplasmic	330	337	0.80
Transmembrane Helix	338	358	0.83
Non-Cytoplasmic	359	366	0.53
Transmembrane Helix	367	383	0.50
Cytoplasmic	384	392	0.43
Transmembrane Helix	393	414	0.74
Non-Cytoplasmic	415	433	0.66
Transmembrane Helix	434	454	0.93
Cytoplasmic	455	464	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINDEESSK EPLLNKNGVD DEIKVKSSLR HHKYFKQLLL IYLFYTLAVM SDYVFSIEIP  60
   61 NIFLNYVNYN FPNLSIFETQ SKASYYKSYS DSLPYATYFL FGPLLGNLSD KYGRKPIMYI 120
  121 GIGSSILDVV ACIITVKTNC LYFFYVSHTF AGISNAAAAA IFSFLKDLSE EDQLPLLYSL 180
  181 LGASIGIGVI TGPLIFIGLS SLSLSSSSSS YIILLVAGGL MILCISIIPF LKESTENAKL 240
  241 EKKINTNNSN NQTLNPFKLI KNLFSNSPFI SFVILIYVLM SFSSEDVNTS YYFYSELMYN 300
  301 WGSKENGLYL GSQGVFIIIW GVLIIPILLK YFSPRKTVSI GINVGIIAHI SLVFSGYSKY 360
  361 LWILGSALNA NGTNNLSLIQ SIVSNSIPYN LQGTIITGTQ AIGSMATFLA SLIFENIYSY 420
  421 FTANSGNRIY YPQATYALNG LIFIITFLIS LIVWKNYKEK KTQT