YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STX7A_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNNNNNFGG GGYNQGGGYN SGGYNNNGGG YNNNNGGYNN NNNNNGGYNN NRPQQQQQQQ  60
   61 QQYVNNNNNS FDNNGYGGDD DVTNNSDYQS TTRNIQQIQN AVQILTKLVQ LLGTPKDSMD 120
  121 TREKIRNCVD STTHLISSES GKVKNLTSLA SRSRDSKNKL LYQKLVKEFN NCLQQFKDIA 180
  181 QVATKKEKTT PLPVAPDHQQ PTTFGRNNNS NNNNQNNHFL NNQQPYYDDD NREDEHQSLM 240
  241 ESSRRQQLAQ IEAEREYQNS IIQERDEGIR KIEQSIVEIN EIFVDLSGLV AEQGVMINTI 300
  301 EASLESTTIN TKEGVNHLRE ASKNQKSSRN KMCWIVLILL IVCAVLGVIL FFTLRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	331	0.62
Transmembrane Helix	332	354	0.93
Cytoplasmic	355	356	0.58