YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBIA1_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTINRNEK TKQVVNKTKE IKTESSQQQQ QKPPISKLMG IILATRPWSL TISVTSVLVG  60
   61 SALAFREIRE FDSIMLSIIL VGAVSLQALG NVVNSFYDCK NGNDTKEKSA DRTMFDFGLT 120
  121 EGNIINLIWY LLIQCAICLG LMIFRMDNIK CIVENILPLG AFGFILNISY TAAPIGLKYI 180
  181 GLGDLTIFLC FGPILVQSAF ISQTHYHDSL AYFYSIPLAL TIVAVLHVNN TRDIKADTEA 240
  241 GSITLASKLG FKNCYYIYAG LYLFAYIYLF KLSLDIDKYI LNLPLILIPK IISLINQFKN 300
  301 KKLEDLTEKT GQLSFFFGGL NAIGVLLSMQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.42
Transmembrane Helix	44	65	0.73
Cytoplasmic	66	72	0.52
Transmembrane Helix	73	93	0.78
Non-Cytoplasmic	94	123	0.67
Transmembrane Helix	124	144	0.92
Cytoplasmic	145	155	0.53
Transmembrane Helix	156	190	0.69
Non-Cytoplasmic	191	209	0.44
Transmembrane Helix	210	230	0.87
Cytoplasmic	231	248	0.72
Transmembrane Helix	249	270	0.77
Non-Cytoplasmic	271	278	0.58
Transmembrane Helix	279	298	0.54
Cytoplasmic	299	309	0.75
Transmembrane Helix	310	329	0.64
Non-Cytoplasmic	330	330	0.71