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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60465670
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDANGITCNN TIKFSSNYAF RIGFFKKFNK GCNVGDVVKV GDLDLGDDKT KVDVNLVVTS  60
   61 VNQADDWFTG EFSYTHTYNP IKLGGKAVTY KVVFTDCCRI KSLLNNAEGS WYISTSVVVD 120
  121 PNQGSDVSTF NRSPVSGMVP IITLNRDKNN QFLIAASDPN GDTLTYSLSN AYTMNQPSGL 180
  181 SIDSSKGIVS FKPTVSGFYS TQIMIKDTKG AYVVVDFLIN SVIEPGVCHP SCSNGGNTCN 240
  241 GNSGCKSCKG TDSNGNTCSS FPPVFVYPPT PTDGSLLAYE VNKTNSFSIQ CKTEEKSKTV 300
  301 FIQPANIPLA ATLTSSDQNK QVSTLTYSML PQLKHIGVYV ISAYCTDNKG LVSTITSFSI 360
  361 SVEKPICGHG TNKPGGGCNC ETGWDPEKNC YECLKGHYGE KCDPVDPCVN GESNEGSQGN 420
  421 GKCTCYYGWE GKNCDIKVNQ VCNANKENVV LDSSVAKSSY INPNFAQVYL NTDPSKQALT 480
  481 LSSKLSIPET IDKFEVLVLV DSQPSIVEYW DNFKKYSSDL TKNLQDISET VSIGLGLFSD 540
  541 AKTNGYSFVL KKSIGNGLSG LDDKDKAPAS SYSTKNSLIA LTSAAEFPAG WSTGSIKIIV 600
  601 LLTDNDYSAT AQEVSKFTST LISKSILPVV VSFNDNQNWD TLFKNQGFGS TKKTSNAKGN 660
  661 DWVSVATSAI KDVLSKAVVK AIDDTKGFLT LPSATTISIE DSKDYTIPIQ IKYPQGQSDI 720
  721 PQNPSVSYSV VGFGITRIVI NYNSAPTALG YSIETKQNVN YNFKLSGSDV DGNTLTIKFK 780
  781 TIPAASVGVI QADGVTIEQG DSFSIEKTFT FKPATNYYTK STNDKFTFVA NDGCLDSNEA 840
  841 TVEIKITHVN QAPSCSSLSG SAISVTGLNT PKSFSLQGSD IETDSNLKIV FGDLTAISAY 900
  901 GNIKSGSNVV STGSSVQLSS GSASLTFTQT KDIANDKEIT VDFKVNDGSL DSSSSCSFKV 960
  961 KFVHFNKPPV AFAVTPLTIR QNSELKITIS ASDSDSDSVI FTLDDLKLGG GDSFFKCDDR1020
 1021 SQLTAPFTTQ PVSISGGVAS FSEICYSSPL VNANSYASLV FFANDGQLSS DKFKVLININ1080
 1081 GDRPNAPPVV NQIPNFTMNE DDISNELVID GIDPDELDQG KLKGIIIQKP TNGVILVKSG1140
 1141 SSTSEAPIIG NAPYKIFYKP NPLYYGTDSF SYTVEDSMGE RDATPKTTQI TVQHVNHAPT1200
 1201 LSIDPYDFTS QTSEKTLELT PKDIDLIDTV FHCTIVKLPA TAIIKTSAGK VIDTVPTDLS1260
 1261 DNKYIITSNN NIYNDFSDSF DAKCYDSSNA VSNIATGPIT FRYINVPPKA ESSDETLNQD1320
 1321 SSVSFSVKAT DLEDNSNVRA VIRSLPAKGT LTIKSTGKAA EISSTYAIDD FVYTPVAGYS1380
 1381 NWDKPGHVGP ADSFNFVAKD SKNDISSNIG TVSFFIEPRN PPTYEGLAVL YTKENTDLPF1440
 1441 SISGIVGNGG SNVFLRIKSI VSRGSLYATH CMGTEGCMSE PNPVDININF TSQPYTFSFT1500
 1501 PIEYENGDNY AIIEFVLYDK FNGQEVESQK YTIIINVIPV NQAPEVILIE HTLSTLPNNV1560
 1561 IAFDKFKTVK METNSYVIIK YDGTDIDDPK EKLKSYIVSP PLRGLLYVYD KDAKDGLGKL1620
 1621 IKKDDTFVPV AQDGFWYIVF VPTPGSSGDG YVRIPISMVD FLGDISVPVT VAVDVSKKNI1680
 1681 PPFITIENKN YTSLANTSIV VTGVSFDDPD SKYNDVELIL SLVNKDGDLV SNKIATFSLS1740
 1741 QQSKAKCTKH SEFAQFTCRS NKKTLNALIS TMYVNHQGGG SYRLKVFVND LGYSSPASIR1800
 1801 DKNHMTATDY VELDVTKPEV TTTKENNNKT VLTGAIAGAA AGAGLLAAGA WFLLKKSAPP1860
 1861 TDAFFGEGAF ADGAVSTNPM YEESGRSAIN PLYEASSENL 

YRC Informatics Platform - Version 3.0
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