YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60465892
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFQSLNPVN KSKSLVALSK SLSYVLRHGA EKEGLKIDSQ GFIKVDDILK NNLFKNTNFK  60
   61 EIQEVVDTND KKRYHMELND SDGCYYIRAN QGHTLENVDN VEMTKITSAD QVGTVFHGTY 120
  121 RKHLQSILNE GLKKMDRNHI HCVNKIMGQE ITSGMRGSCN MIVYIDVPLL LQDGIDLYLS 180
  181 QNNVALTDGL NNTGILPPKY FIKITDAKND VTIWQHMRVK KKKIFIFIFF FFFFFFFFFL 240
  241 IFVLSNYFFF IFFIFFHFFF APNPNFSNTH FGLGPQKKK

Type	Start	End	Confidence
Cytoplasmic	1	223	0.99
Transmembrane Helix	224	244	0.93
Non-Cytoplasmic	245	247	0.49
Transmembrane Helix	248	272	0.61
Cytoplasmic	273	279	0.55